PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011282m
Common NameCARUB_v10011282mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 94aa    MW: 10451.1 Da    PI: 10.0554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011282mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-096184326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++r+G Ck G  CkF H+
  Carubv10011282m 61 QATCPNYSRFGLCKSGLACKFDHS 84
                     678********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.5911240IPR000571Zinc finger, CCCH-type
SMARTSM003560.0921239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-65684IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3055886IPR000571Zinc finger, CCCH-type
SMARTSM003560.025885IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-66184IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSDKKKAKFP ERPGKTICSY YQITGNCHLK KKCKLHHPKD MKPVEPNLAY NDKGLPLRPN  60
QATCPNYSRF GLCKSGLACK FDHSNEASSS GHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011282m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091487.14e-38PREDICTED: zinc finger CCCH domain-containing protein 13-like
SwissprotQ3ECU83e-34C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLR0IK694e-62R0IK69_9BRAS; Uncharacterized protein
STRINGXP_006305997.16e-63(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.12e-28C3H family protein