PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011272m
Common NameCARUB_v10011272mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 466aa    MW: 52309.5 Da    PI: 7.3017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011272mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017282304123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+F+++  L  H  +H
  Carubv10011272m 282 FQCKACKKVFTSHQALGGHRASH 304
                      89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001957.4E-161568IPR001099Chalcone/stilbene synthase, N-terminal
Gene3DG3DSA:3.40.47.104.5E-52067IPR016039Thiolase-like
SuperFamilySSF576672.77E-7281304No hitNo description
PfamPF139124.8E-9281306IPR007087Zinc finger, C2H2
SMARTSM003550.072282304IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159282309IPR007087Zinc finger, C2H2
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
SuperFamilySSF576672.77E-7354381No hitNo description
PfamPF139122.0E-12358382IPR007087Zinc finger, C2H2
SMARTSM003550.51359381IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307359381IPR007087Zinc finger, C2H2
PROSITE patternPS000280361381IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSNSRMNGVE KLSSTSTRRV ANPGKATVLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI  60
KEKLEHLSVL ARDTERDRRE VDRGRHKLQA RKRPPAEDRG EHRRVLQEAD GKGRRTCDSE  120
PSGDKTKAGE REAGEQQKGV GGLREREQQH DTKVLSYLEP QKQEDTKPVT STKNKGFLLF  180
NSHTKHFAER HGRTMNSSCI DFVMFSRGQH DEDSNMSRRP WKRPERSIST SSSHHNNHLN  240
LSPNEDEELA NCLVLLSNSG DHNKHRHGKG KNVKKQKTAQ VFQCKACKKV FTSHQALGGH  300
RASHKKVKGC FASQDKEEED EEEYKEDDDE EEEDEDEEEE EEDVDKSTAH IARKRSNAHE  360
CTICHRVFSS GQALGGHKRC HWLTPSNYLR MTSSSSSSVL HDHHHSAVGR PQPLDQPSLD  420
LNLSCQEYSG DPTAMTVGVI QRDGGGSNHN ATSSSWLKLA SGDWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011272m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934221e-139AB493422.1 Arabidopsis thaliana At1g02040 mRNA for hypothetical protein, partial cds, clone: RAAt1g02040.
GenBankBT0300401e-139BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds.
GenBankCP0026841e-139CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899591e-139U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645586.10.0zinc finger protein ZAT10
TrEMBLR0GSW40.0R0GSW4_9BRAS; Uncharacterized protein
STRINGXP_006305993.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-25C2H2-like zinc finger protein