PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10011253m | ||||||||
Common Name | CARUB_v10011253mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 453aa MW: 51610.2 Da PI: 7.4388 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.6 | 1e-52 | 50 | 177 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s Carubv10011253m 50 LLPGFRFHPTDEELVSFYLKRKVQHNPLSI-ELIRQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYS 142 579***************************.89***************7777889*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Carubv10011253m 143 SeGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 177 956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-59 | 46 | 209 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.532 | 50 | 209 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 52 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MHAVHKLRAN VLFKFFITII SNVIQTFRLR VLEIMGERTD DGEQKMEEVL LPGFRFHPTD 60 EELVSFYLKR KVQHNPLSIE LIRQLDIYKY DPWDLPKFAM TGEKEWYFYC PRDRKYRNSS 120 RPNRVTGAGF WKATGTDRPI YSSEGNKCIG LKKSLVFYKG RAAKGVKTDW MMHEFRLPSL 180 SEPSPPSKRF FDSPVSPNDS WAICRIFKKT STTTLRALSH SFVSSLPPET SSDTMSDQKP 240 SNTYHFSSDK ILKTSSPFQF HHENMNTPKT SNSTTPSVAT ISPFSYLDFT SYDKPTSIFS 300 PVSCLEQQYL TNLFLSTQET QPQFPRPTLS NEIPSFLLNT SSNSTFLGMG EYTSHIDLSA 360 VLAQEECPAL VSLPQEFQEK GFEGNGIMKN MRGSNEDHHG HCDTLRYDVF TSTPDENHQH 420 HQGLKQNMTL LESYYSSLSS ISGDLPACFS TT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 50 | 213 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 50 | 213 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 50 | 213 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 50 | 213 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-56 | 50 | 213 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 4e-56 | 50 | 213 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 4e-56 | 50 | 213 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 4e-56 | 50 | 213 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 4e-56 | 50 | 213 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 4e-56 | 50 | 213 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 4e-56 | 50 | 213 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 4e-56 | 50 | 213 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 4e-56 | 50 | 213 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 50 | 213 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10011253m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005508 | 0.0 | AC005508.1 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023632826.1 | 0.0 | protein FEZ | ||||
Swissprot | Q9ZVH0 | 0.0 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | R0GL88 | 0.0 | R0GL88_9BRAS; Uncharacterized protein | ||||
STRING | XP_006303608.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10011253m |
Entrez Gene | 17897334 |
Publications ? help Back to Top | |||
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