PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011115m
Common NameCARUB_v10011115mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 387aa    MW: 43825.5 Da    PI: 5.6688
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011115mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07331376145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                      + +W+t E +   ++ +++G + Wk I  + +   +Rt  ++k++++
  Carubv10011115m 331 KVPWSTAETLAVMKGYEKYGAN-WKQIKDENPilVRRTNGDIKDKFR 376
                      579*****************99.**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.494326383IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-8327380IPR009057Homeodomain-like
SuperFamilySSF466894.52E-7328378IPR009057Homeodomain-like
SMARTSM007173.7E-4330381IPR001005SANT/Myb domain
CDDcd116608.35E-12332380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MALSQWKEAI LEGIFMEIED GVVEEKNLER LENLVEILHK EGSKVPESVK QAFCKVAVEC  60
TAKCLTYEKD AKEAYIEAIK SIWLRRIMPL CDKVSCLVTR DLLNSCRRLW TAHSDEKACK  120
SLMDENTRDK ALVSLRKVVS ELNPNLVAEL NPNMDASEDI ESSEESEETE SMVEARETEA  180
IRNSKASEAM DEDQDTELER PTVGGSKADF FPRQYKTISS AVVNRALRKL RASKMELVKA  240
LEKGGPSNLN IESITEQKND VVNPSGTNIA SSPSLMERRT TAHTYEWEDS IDDSDGELGD  300
DGERNNKTKR KKIVVSPLKR NRSSEGGRRK KVPWSTAETL AVMKGYEKYG ANWKQIKDEN  360
PILVRRTNGD IKDKFRVEMR REGRHH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309330RKKIVVSPLKRNRSSEGGRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011115m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195340.0AY519534.1 Arabidopsis thaliana MYB transcription factor (At1g06910) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305908.10.0uncharacterized protein LOC17900333
TrEMBLR0GSN90.0R0GSN9_9BRAS; Uncharacterized protein
STRINGXP_006305908.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.10.0TRF-like 7