PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011108m
Common NameCARUB_v10011108mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 263aa    MW: 30553.3 Da    PI: 5.9937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011108mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.4e-5061401128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r nratksgyWkatgkd+++
  Carubv10011108m   6 LPPGFRFHPTDEELVGYYLHRRNEGLEIEL-EIIPFMDLYKFDPWELPeKsFLPNRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGKDRKI 98 
                      79****************************.99**************95334556888************************************ PP

              NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++      +++ +g++ktLvf+ grap g +tdWvmheyrl
  Carubv10011108m  99 ICHttssslSSSIIGCRKTLVFHLGRAPFGGRTDWVMHEYRL 140
                      *986666666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-574164IPR003441NAC domain
PROSITE profilePS5100555.2286164IPR003441NAC domain
PfamPF023655.4E-287140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVGSYLPPGF RFHPTDEELV GYYLHRRNEG LEIELEIIPF MDLYKFDPWE LPEKSFLPNR  60
DMEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRKIIC HTTSSSLSSS IIGCRKTLVF  120
HLGRAPFGGR TDWVMHEYRL CDSDPSQGSV NFKGDFALCR VIKRNEHTVK KCETNSPEVL  180
DEPLSNNVES SCQASDLEKG SCDSSNTRWS SPDLIILESS FQYPPAFFAD LNFDWEIENP  240
FTFDYHTEAH MNNEVMNYHI LR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-50617020174NAC domain-containing protein 19
3swm_B7e-50617020174NAC domain-containing protein 19
3swm_C7e-50617020174NAC domain-containing protein 19
3swm_D7e-50617020174NAC domain-containing protein 19
3swp_A7e-50617020174NAC domain-containing protein 19
3swp_B7e-50617020174NAC domain-containing protein 19
3swp_C7e-50617020174NAC domain-containing protein 19
3swp_D7e-50617020174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00175DAPTransfer from AT1G32510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011108m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-100CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D141e-100AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644894.11e-158NAC domain-containing protein 71
SwissprotO496975e-87NAC71_ARATH; NAC domain-containing protein 71
TrEMBLR0GN340.0R0GN34_9BRAS; Uncharacterized protein
STRINGXP_006304459.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150291719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.11e-158NAC domain containing protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]