PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10010920m | ||||||||
Common Name | CARUB_v10010920mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 36133.5 Da PI: 8.0713 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.6 | 1.2e-53 | 8 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+++yLkkk++ +k+++ evikevd++k+ePwdL+ ++ + ++ewyfFs++d+ky+tg+r+nrat+sg+Wkatg+dk Carubv10010920m 8 VPPGFRFHPTDEELLHYYLKKKISYEKFDM-EVIKEVDLNKIEPWDLQDrcRIGStPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKC 100 69****************************.99**************952433332556*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +++g++ktLvfykgrap+g+ktdW+mheyr+ Carubv10010920m 101 IRN-CYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRI 136 **9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-59 | 7 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.766 | 8 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SYEKFDMEVI KEVDLNKIEP WDLQDRCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATHSG FWKATGRDKC IRNCYKKIGM RKTLVFYKGR 120 APHGQKTDWI MHEYRIEDTD DDPSEDGWVV CRVFKKKNLF KVGNENVVGS SINNNRIESR 180 SFIRRESSYQ GVSMFELNKP EEIGVHQYTQ PPMFQPHHQK PLSVGYDYSL ALLPRESEYP 240 QARCEPSSGV EVGTCKTVGE WGMVNCHIGN HDQDSSRAMR FEDEGNNNNS STVQPPPSNL 300 LSLRGENGFL GLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-50 | 8 | 158 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10010920m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303519.1 | 0.0 | protein BEARSKIN1 | ||||
Swissprot | Q9C878 | 0.0 | BRN1_ARATH; Protein BEARSKIN1 | ||||
TrEMBL | R0GKG7 | 0.0 | R0GKG7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006303519.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5213 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33280.1 | 0.0 | NAC domain containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10010920m |
Entrez Gene | 17897885 |
Publications ? help Back to Top | |||
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