PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10010705m | ||||||||
Common Name | CARUB_v10010705mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 110aa MW: 12557.2 Da PI: 5.1918 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 50 | 83 | 17 | 55 |
HHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 N++++ L++++P+ + +K ++L k+++Y+++L+ Carubv10010705m 50 NDKLNVLKSMVPTV---NETKsQ---SVLNKTIKYLHELE 83 9************7...677745...59*******99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-7 | 48 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-8 | 49 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MCCGRYLHDV PLMHSSDEKK MFQAETTGLN QCVSMEYDDD DPSHDKTKEN DKLNVLKSMV 60 PTVNETKSQS VLNKTIKYLH ELEARVEELE SQHGCVSRLR LTITMECSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10010705m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474787.1 | 7e-36 | PREDICTED: transcription factor MYC1-like | ||||
Swissprot | Q8W2F1 | 3e-25 | BH012_ARATH; Transcription factor MYC1 | ||||
TrEMBL | R0I270 | 3e-75 | R0I270_9BRAS; Uncharacterized protein | ||||
STRING | XP_006303446.1 | 5e-76 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00480.1 | 1e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10010705m |
Entrez Gene | 17897423 |