PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010563m
Common NameCARUB_v10010563mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 150aa    MW: 16685 Da    PI: 6.7857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010563mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.000137761054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     + R d++ ++++ L++++ +      +K + a++L  A++YI  L
  Carubv10010563m 37 KERKDKVGERISALQQIVSPY-----GKTDTASVLLDAMHYIEFL 76
                     67899999***********99.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.3472776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-82787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-43281No hitNo description
SMARTSM003530.00423582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-103789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEFSRDAGMM MENKRNVCSL GESSIKRHKS DLSFNSKERK DKVGERISAL QQIVSPYGKT  60
DTASVLLDAM HYIEFLHEQV KVLSAPYLQT IPDATQEELE QYNLRNRGLC LVPMENTVGV  120
AQSNGADIWA PVKTPLSPTF SVTSQSTFK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010563m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0878580.0AY087858.1 Arabidopsis thaliana clone 3900 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645715.11e-110transcription factor bHLH153
SwissprotQ7XJU21e-107BH153_ARATH; Transcription factor bHLH153
TrEMBLR0GN351e-108R0GN35_9BRAS; Uncharacterized protein
STRINGXP_006304283.11e-109(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-109bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]