PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009926m | ||||||||
Common Name | CARUB_v10009926mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 32593.1 Da PI: 7.4401 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 5.9e-52 | 6 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++Pw+Lp + +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg dk++ Carubv10009926m 6 LPPGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAEIDLYKYDPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGL 98 79*************************999.88***************6555679*************************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfy g+apkgekt+W+mheyrl Carubv10009926m 99 --PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 130 ..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-62 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.287 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 7 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MSELQLPPGF RFHPTDEELV MHYLCRKCAS QSIAVPIIAE IDLYKYDPWE LPGLALYGEK 60 EWYFFSPRDR KYPNGSRPNR SAGSGYWKAT GADKPIGLPK PVGIKKALVF YAGKAPKGEK 120 TNWIMHEYRL ADVDRSVRKK KNSLRLDDWV LCRIYNKKGA IERRGQPPLP VVTEDIVEEK 180 PKVTEMGMPP PPQQRSEFVY FDTSDSVPKL HTTESSCSEQ VVSPEFTSEV QSEPKWKDWS 240 AAVSNNNTLD FGFNYIDATV DNAFGGGGSN QMFPLQDMFM YMPKPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-80 | 2 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009926m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF370617 | 0.0 | AF370617.1 Arabidopsis thaliana OsNAC6 protein-like protein (T1N6.12) mRNA, complete cds. | |||
GenBank | BT024513 | 0.0 | BT024513.1 Arabidopsis thaliana At1g01720 mRNA, complete cds. | |||
GenBank | X74755 | 0.0 | X74755.1 A.thaliana ATAF1 mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305484.1 | 0.0 | NAC domain-containing protein 2 isoform X1 | ||||
Swissprot | Q39013 | 0.0 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | R0GR38 | 0.0 | R0GR38_9BRAS; Uncharacterized protein | ||||
STRING | XP_006305484.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009926m |
Entrez Gene | 17897541 |