PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009919m
Common NameCARUB_v10009890mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 289aa    MW: 31837.5 Da    PI: 9.6537
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009919mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v ++G+g Wk I r  +      +R+  ++k++w+++
  Carubv10009919m  5 KLKWTAEEEEALLAGVGKHGPGKWKNILRDPQfadqlSNRSNIDLKDKWRNL 56
                     689***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.578162IPR017930Myb domain
SuperFamilySSF466898.96E-15358IPR009057Homeodomain-like
SMARTSM007177.3E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-14556IPR009057Homeodomain-like
PfamPF002493.8E-9556IPR001005SANT/Myb domain
CDDcd116601.40E-20756No hitNo description
SMARTSM005261.6E-17122187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.8E-11123191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.592124192IPR005818Linker histone H1/H5, domain H15
PfamPF005384.1E-9126185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466898.96E-15126160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV GKHGPGKWKN ILRDPQFADQ LSNRSNIDLK DKWRNLSVAP  60
GIQGSKDKIR TPKIKAAAFH LATAAAAATL PPTVLPSPIV TLIRSVSSDL SIDESCNIVV  120
DAKNAPRYDG MIFEALSTLT DVNGSDVSAI FNFIEQRHEV PLNFRRILSS RLRRLAAQGK  180
LEKTQNFYKM NDNSLVPRTP LVARPKETNV KPRQTNSQGP SVSQEMVGEA SITAAYKLVE  240
VENKLDVVKG SSEEIQRMVN LAKHAENMLA IAREMHEECC QGKIMLLN*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009919m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185330.0AK118533.1 Arabidopsis thaliana At1g17520 mRNA for putative myb-related DNA-binding protein, complete cds, clone: RAFL19-76-F04.
GenBankAY5195380.0AY519538.1 Arabidopsis thaliana MYB transcription factor (At1g17520) mRNA, complete cds.
GenBankBT0052900.0BT005290.1 Arabidopsis thaliana At1g17520 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304059.10.0telomere repeat-binding factor 4 isoform X4
SwissprotF4I7L11e-149TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLR0GM010.0R0GM01_9BRAS; Uncharacterized protein
STRINGCagra.0824s0121.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-141MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]