PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009831m
Common NameCARUB_v10009831mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 309aa    MW: 33286.8 Da    PI: 6.7445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009831mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.6e-09162206554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  Carubv10009831m 162 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 206
                      99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14155216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14159216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6162206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MANNNNNPHD NISDPSVTDD FFEQILGISN FSASSGSGLS GIGGGLSGVG PPPMMLQLGS  60
GDEGNHNHMG AIGGPGPVGF HNHMFPLGLS LDQGKGHGFL KPEGVHPSGK RFQDDVIDNR  120
CSSMKPVYHG QPMTQPAPPM PHQQSTIRPR VRARRGQATD PHSIAERLRR ERIAERIRAL  180
QELVPTVNKT DRAAMIDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVTE MPLSSSIEDE  240
TQAVWEKWSN DGTERQVAKL MEENVGAAMQ LLQSKALCIM PISLAMAIYH SQPPDTSSVV  300
KPEMNPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009831m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531530.0AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305432.10.0transcription factor bHLH7
SwissprotQ93Y001e-174BH007_ARATH; Transcription factor bHLH7
TrEMBLR0IIQ60.0R0IIQ6_9BRAS; Uncharacterized protein
STRINGXP_006305432.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-165bHLH family protein