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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Carubv10009814m |
| Common Name | CARUB_v10009814mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
MYB_related |
| Protein Properties |
Length: 313aa MW: 34994.4 Da PI: 4.7419 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10009814m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 21.8 | 4.5e-07 | 218 | 272 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48
WT+ E++ l +v+ + ++ Wk+I ++ k+R + ++k++w++ l
Carubv10009814m 218 LWTAKEEDMLRVGVEIFSTKikknmPWKKILEMGKgvfhKTRNPSDLKDKWRNML 272
6******************************9888*****************975 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
LGETEEIGSV NEKLIEICNA HCDGGDNDFN SAKNFFYYDR NFGNDEICRS FELSNELACI 60
VCDLLDGSVV PCSGNDCPFA IHRKCAELDC EDPASAYCPY CWLKYQATRS TAVAAAKART 120
SALVRNGDIA TTRENIQLEN GPDKSLPMQL HENIHQIRKV TDQLKALNFQ LDESVDQLND 180
TEKACGEASV VVNDQFIDIE TSRNEASVVV NDQPKRVLWT AKEEDMLRVG VEIFSTKIKK 240
NMPWKKILEM GKGVFHKTRN PSDLKDKWRN MLHMSMKKLG DFDDGLCLCN RSFGFLRIGD 300
QNGEGEKGGS DE*
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