PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009727m | ||||||||
Common Name | CARUB_v10009727mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37007.9 Da PI: 6.5299 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.2 | 4.7e-34 | 9 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p G+rF Pt+ee+ +yL+ k +e+++ ++++vi++v+i +++Pw+Lp k v++++ wyfF ++ky++g r++r+t+sg+Wk+tg++ Carubv10009727m 9 PTGVRFCPTEEEIF-YYLRIKnLESNTSHVDQVISTVNISSSDPWHLPpKatiIVETTDLVWYFFGLIETKYNKGVRQSRQTQSGFWKKTGETM 101 89**********99.899877256666888889**************96555544556669********************************* PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ k +ge++g k++L+fy ++g k++W+mhey++ Carubv10009727m 102 DIKPKsgDGEKIGEKRVLMFY---LKSGLKSKWTMHEYHA 138 **998889999**********...688999********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-36 | 4 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.881 | 8 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-18 | 9 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MSLSKLVYPT GVRFCPTEEE IFYYLRIKNL ESNTSHVDQV ISTVNISSSD PWHLPPKATI 60 IVETTDLVWY FFGLIETKYN KGVRQSRQTQ SGFWKKTGET MDIKPKSGDG EKIGEKRVLM 120 FYLKSGLKSK WTMHEYHATI PDQVMTNTLC KVEFKGEKRE IEESRSLYPA PMNNTIIGGL 180 IKNPSKITGS PLDMDALDQV MDNLLNTDFK GLADNDDDQQ SKDVYMEEYN RYEPKKPLTG 240 FIDDSSDSDS TSPTTSSIQT WSTCDSSNQI PTDLQESPTS TIKETPEKKK KTCGDDTLVM 300 NKNKRAGFFG RMIQKFAKKI QLCSSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swm_B | 2e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swm_C | 2e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swm_D | 2e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_A | 2e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_B | 2e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_C | 2e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_D | 2e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009727m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305341.1 | 0.0 | NAC domain-containing protein 5 | ||||
Swissprot | O81914 | 5e-99 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | R0I7D2 | 0.0 | R0I7D2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006305341.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 6e-86 | NAC domain containing protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009727m |
Entrez Gene | 17900436 |
Publications ? help Back to Top | |||
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