PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009638m
Common NameCARUB_v10009638mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 343aa    MW: 38891.7 Da    PI: 8.8586
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009638mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.29.5e-341032431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                      lp+G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++     
  Carubv10009638m 103 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeeg 192
                      799***********9.89*****999956644322..22222333336**********.566677888******************73334544 PP

              NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++vls ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Carubv10009638m 193 hETRWHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 243
                      4788************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-3694262IPR003441NAC domain
PROSITE profilePS5100532.596103262IPR003441NAC domain
PfamPF023651.5E-14104243IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVISQVFARS LNRARERERE VSKRRRMSWC DGSDDNYDLN LERVSNIDQP STQLKDQSQS  60
CVTSGPDSKI IVESPVMVTC PSCGQKIHHQ DDQVGSIKDL PSLPAGVKFD PSDKEILMHL  120
EAKVSSDKRK LHPLIDEFIP TLEGENGICY THPEKLPGVS KDGQVRHFFH RPSKAYTTGT  180
RKRRKVSTDE EGHETRWHKT GKTRPVLSQS GEAGFKKILV LYTNYGRQKK PEKTNWVMHQ  240
YHLGKSEDEK DGEPVLSKVF YQTQPRQCGN PTEPKPKNLV NLNRFSYENS QTGFGYEHGG  300
KSTEETSQVI RELVVREGDG SCSFLRFTCD ASKGKESFMK NQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11625REREVSKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009638m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864760.0AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023646001.10.0NAC domain-containing protein 10
SwissprotF4HY610.0NAC10_ARATH; NAC domain-containing protein 10
TrEMBLR0GQV50.0R0GQV5_9BRAS; Uncharacterized protein
STRINGXP_006305263.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.10.0NAC domain containing protein 10