PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009624m
Common NameCARUB_v10009624mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 346aa    MW: 38460.9 Da    PI: 8.7313
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009624mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-184892147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+e++++a+k++G g W+ I +++g ++t+ q++s+ qk+
  Carubv10009624m 48 REKWTEEEHERFLEAIKLYGRG-WRQIEEHIG-TKTAVQIRSHAQKF 92
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-164296IPR009057Homeodomain-like
PROSITE profilePS5129421.0274397IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-104495IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-164695IPR006447Myb domain, plants
SMARTSM007175.0E-134795IPR001005SANT/Myb domain
PfamPF002494.6E-154891IPR001005SANT/Myb domain
CDDcd001673.28E-115093No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
ADVRSEELSS NVENGICNSN EGTNPETTSH WLENVVKVRK PYTVTKQREK WTEEEHERFL  60
EAIKLYGRGW RQIEEHIGTK TAVQIRSHAQ KFFSKMAQEA DNRSERSNKA IVIPPPRPKR  120
KPAHPYPRKS PIPFSQSPPS NMSAMEKGTK SPTSVLSSFA SEDQNNRCSS PNSCTSDFQS  180
IGGTSITKTN DYATSKQSLK EDATPMSSIV LFGKIVLVPE KSHKPPSYTD DDDRKSMTGQ  240
ENHCSGIKNS TLHIGSRHVD TDLSLGIWEA SCTGSNAFGS VTEMSENLEK NAEKRLSFLE  300
KQGSCNPASG FRPFKRCLSE REVTSSLSLV TAEEQKSQRR ARICS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009624m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1156960.0AB115696.1 Arabidopsis thaliana EPR1 mRNA for MYB-related transcription factor EPR1, complete cds.
GenBankAY0639520.0AY063952.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds.
GenBankAY1140700.0AY114070.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305253.20.0protein REVEILLE 7
SwissprotB3H5A80.0RVE7_ARATH; Protein REVEILLE 7
TrEMBLR0GQU50.0R0GQU5_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006305253.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.10.0MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]