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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Carubv10009540m |
| Common Name | CARUB_v10009540mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
B3 |
| Protein Properties |
Length: 360aa MW: 40575.8 Da PI: 6.1766 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10009540m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 98 | 5.9e-31 | 56 | 158 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.. 87
f+kv tpsdv+k++rlv+pk++ae++ ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+
Carubv10009540m 56 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDes 149
89***************************966677889*************************************************5434423 PP
SEE..EEEE CS
B3 88 sefelvvkv 96
++ +l++ +
Carubv10009540m 150 ERSKLYIDW 158
555555555 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGTGNNNN NLPMMMIPPA EKEHMFDKVV 60
TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR NGKMWRFRYS YWNSSQSYVM 120
TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN 180
FPTTSQYSNR FQPLPEYNSV PIHRSLNLAN HQRSYYNNNQ RQEFVGYGYG NLAGRCYYTG 240
SPLDQRNIVG SEPLVIESVP VVPGRLTPVM LPPLPAPPST AGKRLRLFGV NMECGNDYNQ 300
QEDSWLMPRR EMGASSSSSS SALRLNLSTD HDDDDDDDGG DDDQFAKKGK SSFSLNFNP*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 8e-64 | 50 | 164 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 8e-64 | 50 | 164 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC007323 | 0.0 | AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence. |
| GenBank | AF196566 | 0.0 | AF196566.1 Arabidopsis thaliana chromosome I, partial sequence. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | FJ873733 | 0.0 | FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds. |
