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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Carubv10009522m |
Common Name | CARUB_v10009522mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
HSF |
Protein Properties |
Length: 364aa MW: 41137.1 Da PI: 7.9125 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Carubv10009522m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.2 | 8.7e-36 | 49 | 141 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95
Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk+g+k+ll+
Carubv10009522m 49 FLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLC 133
9*****************************************************************99.........***************** PP
XXXXXXXX CS
HSF_DNA-bind 96 kikrkkse 103
+i+r+k++
Carubv10009522m 134 EIHRRKTS 141
*****987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 364 aa
Download sequence Send
to blast |
LSSLSLSLSL ENSLMAMMVE NSYGGYGGGG GERIQLMVEG QGKAVPAPFL TKTYQLVDDP 60 ATDHVVSWGD DDTTFVVWRP PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA 120 NEFFKRGEKH LLCEIHRRKT SQMIPQQHSP FMSHHHGHHA PPQVPFSGGS FFPLPPRVTT 180 PEEDHYWCDD SPPSRPRVIP QHNNIDTTAA QVTALSEDNE RLRRSNTVLM SELAHMKKLY 240 NDIIYFVQNH VKPVAPSNSY LSSFLQKQQP PTLDYYNTAT TVNATTNNNL NHGLNSSPPT 300 SQSSITVLED DTNNHDQRNM RKTKLFGVSL PSSKKRSHHF SDQSSKTRLV LDKSDLALNL 360 MTA*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493499 | 0.0 | AB493499.1 Arabidopsis thaliana At1g46264 mRNA for hypothetical protein, partial cds, clone: RAAt1g46264. |