PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10009458m

Common Name

CARUB_v10009458mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 378aa MW: 41681.5 Da PI: 7.7083

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10009458m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.7e-12	314	359	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + a++L +Av+YIk+Lq Carubv10009458m 314 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 359 689*******************7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.072	308	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-16	311	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.96E-11	312	363	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-15	313	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-13	314	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-9	314	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0042335	Biological Process	cuticle development
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MESEFQQHHF LIHQHDHQHQ RPRNSGLIRY QSAPSSYFSS FGESIEEFLD RPTSPETERI 60 LSGFLQTTDT SNNVDSFLHH AFNSDGTEKK PLEVKTEEEE SIEIPVTAAT AMNVGDVEIP 120 GDSYALVSRN LGRNKRPREK DDRTPPVNNL ARHNSSPAGL FSSIDVETAY AAVMKSMGGF 180 GGGNVMNTSN TEASSLTPRS KLLPPVSRAM SPISEVDVKP GFSSRLPPRT LSGGFNRSFG 240 NEGSASSKLT AIARTQSGGL DQYKTKEEDS ASRRPPLAHH MSLPKSLSDI EQLLSDSIPC 300 KIRAKRGCAT HPRSIAERVR RTKISERMRK LQDLVPNMDT QTNTADMLDL AVQYIKDLQD 360 QVKALEEARA RCRCSSA*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MESEFQQHHF LIHQHDHQHQ RPRNSGLIRY QSAPSSYFSS FGESIEEFLD RPTSPETERI  60
LSGFLQTTDT SNNVDSFLHH AFNSDGTEKK PLEVKTEEEE SIEIPVTAAT AMNVGDVEIP  120
GDSYALVSRN LGRNKRPREK DDRTPPVNNL ARHNSSPAGL FSSIDVETAY AAVMKSMGGF  180
GGGNVMNTSN TEASSLTPRS KLLPPVSRAM SPISEVDVKP GFSSRLPPRT LSGGFNRSFG  240
NEGSASSKLT AIARTQSGGL DQYKTKEEDS ASRRPPLAHH MSLPKSLSDI EQLLSDSIPC  300
KIRAKRGCAT HPRSIAERVR RTKISERMRK LQDLVPNMDT QTNTADMLDL AVQYIKDLQD  360
QVKALEEARA RCRCSSA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00195	DAP	Transfer from AT1G51140	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10009458m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY034941	0.0	AY034941.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
GenBank	AY063120	0.0	AY063120.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305091.1	0.0	transcription factor bHLH122
Swissprot	Q9C690	0.0	BH122_ARATH; Transcription factor bHLH122
TrEMBL	R0I6R6	0.0	R0I6R6_9BRAS; Uncharacterized protein
STRING	XP_006305091.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10009458m
Entrez Gene	17897727

Publications ? help Back to Top
Yang Z, et al. Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase. Mol. Cell Proteomics, 2013. 12(12): p. 3559-82 [PMID:24043427] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation. Plant J., 2016. 87(6): p. 559-67 [PMID:27227462] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Takahashi Y,Ebisu Y,Shimazaki KI Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors. Plant Physiol., 2017. 174(2): p. 815-822 [PMID:28438792]