PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10009451m | ||||||||
Common Name | CARUB_v10009451mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 380aa MW: 43704.9 Da PI: 4.8089 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.5 | 3e-37 | 5 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +Gf+F+P+deelv +yL++k+eg++ ++++i+ev+i++++PwdL+++ k ++k wyfFs+r++ g r+nr t sg+Wk tg++ +v Carubv10009451m 5 VGFEFRPNDEELVGHYLRNKIEGDTSLVDTAIPEVNICSYDPWDLRRQSKIRSKypvsVWYFFSRREN----GIRQNRRTPSGFWKLTGESVDV 94 7************************999889**************853333333335599****9865....88******************** PP NAM 93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++g k++Lvf kgr ++ +k+dWvmhe++ Carubv10009451m 95 NDQwgfwtgAQGKIGHKRVLVFLKGRGSQQTKSDWVMHEFHY 136 **99999887778***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.58 | 3 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.58E-39 | 4 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-22 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MEGMVGFEFR PNDEELVGHY LRNKIEGDTS LVDTAIPEVN ICSYDPWDLR RQSKIRSKYP 60 VSVWYFFSRR ENGIRQNRRT PSGFWKLTGE SVDVNDQWGF WTGAQGKIGH KRVLVFLKGR 120 GSQQTKSDWV MHEFHYDYDL LPEHERTYVI CRLEYKGRDT KFLFDCPTDP TPTFVPNPTN 180 SEGSVVDRSF EEYLGSFYNI SEFDSANQGH QLGNFNMQQQ VPYLEDSCVD DPQRIWDYPI 240 SEIMSIMQVN PSNHCPKTPL TGVLADDSCD SDTDSMTCRD TSSSTDSDGC SNESDHTLTD 300 DDISSLNTIE PLHNYEARGM PKQPVLHLQV KQKVFTNTVK HNWIVLEEMT QTNSKWNYLK 360 NMIIGFLLLI SIIGWIIVV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-19 | 6 | 135 | 18 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10009451m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305085.1 | 0.0 | NAC domain-containing protein 1 | ||||
Swissprot | Q0WV96 | 1e-132 | NAC1_ARATH; NAC domain-containing protein 1 | ||||
TrEMBL | R0ILS3 | 0.0 | R0ILS3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006305085.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7658 | 16 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01010.1 | 1e-115 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10009451m |
Entrez Gene | 17899028 |
Publications ? help Back to Top | |||
---|---|---|---|
|