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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009423m | ||||||||
Common Name | CARUB_v10009423mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 385aa MW: 43797 Da PI: 6.1251 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.9 | 1.3e-09 | 97 | 137 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 +k rr+++NReAAr+sR+RKka +++Lee +L++ ++ Carubv10009423m 97 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 137 7899*************************987777766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-7 | 88 | 138 | No hit | No description |
SMART | SM00338 | 0.0024 | 90 | 152 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.347 | 96 | 138 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.81E-6 | 98 | 140 | No hit | No description |
Pfam | PF07716 | 2.3E-5 | 98 | 143 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 101 | 116 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.1E-29 | 185 | 259 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEMMSSSSSS TQVVSFRDMG MYEPFQQLSG WENPFKDVNN IDNNNQNNNQ SSSTTLEVDA 60 RPEPDDNNRA NYASLYNNSV EAEPSSNNDQ DEDRINDKMK RRLAQNREAA RKSRLRKKAH 120 VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE 180 QNKRVSEIRT ALQAHISDIE LKMLVDTCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE 240 RFFQWIGGFR PSELLNVVMP YIEPLTDQQI LAVRNLQQSS QQAEEALSQG LDKLQQGLVE 300 SIAVQIKVVE SANHSAQMAS AMDNLQALET FVNQADHLRQ QTLQQMSKIL TTRQSARGLL 360 ALGEYFHRLR ALSSLWAARP REHT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00157 | DAP | Transfer from AT1G22070 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009423m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATHTAGIA | 0.0 | L10209.1 Arabidopsis thaliana transcription factor mRNA, complete cds. | |||
GenBank | BT026034 | 0.0 | BT026034.1 Arabidopsis thaliana At1g22070 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305058.1 | 0.0 | transcription factor TGA3 | ||||
Swissprot | Q39234 | 0.0 | TGA3_ARATH; Transcription factor TGA3 | ||||
TrEMBL | R0GQ99 | 0.0 | R0GQ99_9BRAS; Uncharacterized protein | ||||
STRING | XP_006305058.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3061 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22070.1 | 0.0 | TGA1A-related gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009423m |
Entrez Gene | 17899797 |