PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009382m
Common NameCARUB_v10009382mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 393aa    MW: 42360.4 Da    PI: 8.1541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009382mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10325370655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Carubv10009382m 325 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 370
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-14322381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.85E-11323374No hitNo description
Gene3DG3DSA:4.10.280.106.2E-13324382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-12325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8325370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
KKTKTHNFAL HLSLFFLLFS LSLHLAIEAM YQSSSSTSSS SQRSSLPGGG GGGLIRYGSA  60
PGSFLNSVVD EVIGGGSNAR DFTGYQPSDN FIGNFFAGAD SSSLRSDSTT CGVNSSDGQK  120
QLGNHHSSNN KDLFLDRSYG GFNHEISQQK SNELGGGSGN SSGSYSLARQ RSSPADFFSY  180
LSADKNNFAL NQPTSDYNNP QVGSTNVGRG HSRLKSQLSF TSHDSLARIN EVNETPVHDG  240
SGHSFSAASF GAAATDSWDD GSGSIGFTVT RPNKRSKDMD SGLFSQYSLP SDTSMNYMDN  300
FMQLPEDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK KLQDLVPNMD KQTSYSDMLD  360
LAVQHIKGLQ HQLQSLKKDQ ENCTCGCSER QS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009382m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0861060.0AY086106.1 Arabidopsis thaliana clone 21406 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305016.20.0transcription factor bHLH128
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLR0I6G40.0R0I6G4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006305016.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]