PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009210m
Common NameCARUB_v10009210mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 429aa    MW: 47605 Da    PI: 5.6051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009210mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.5e-09265313355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Carubv10009210m 265 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 313
                      58*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16260330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.51E-11260317No hitNo description
PROSITE profilePS5088815.497262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15263326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6265313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-9268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
LFDKNLSFTK LEDMDMSDKD EFAAKKMDLD WRISVSNPIV SYPPENPMPG PSQMMDSFRQ  60
NLWHDGGGFN VHTDRGTSSR GNVDRPVEMG WNMAQFPADS GFIERAAKFS FFGCGSFGEM  120
MMNQQSLGGP QSTGLFVQDT QNQIGVATGS NQVDGPLKDA TKVVKENGSS NVSEDSQSSG  180
GNGHDDAKCM EISSKRFNAK KRKRTGKDSE HRGQQSGEEE EEDKNEKDEQ SPNSNANKTN  240
SGKQASDTLK DGYIHMRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCDKVTGKAV  300
MLDEIINYVQ SLQCQIEFLS MKLSAVNPVL DYNLESLLAK DALQVPAPIL PQDMSMLYPP  360
LSHHSQKGFM QPNISSMSIL NGGLIRQERH GYESDQHNVV HMNHETDTAP NHEDATGENK  420
IQILSYLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204KKRKRT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009210m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304830.0AJ630483.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g26260.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307586.20.0transcription factor bHLH76
SwissprotQ9C6700.0BH076_ARATH; Transcription factor bHLH76
TrEMBLR0IP790.0R0IP79_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006307587.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM166891012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.20.0cryptochrome-interacting basic-helix-loop-helix 5
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]