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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009191m | ||||||||
Common Name | CARUB_v10009191mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 433aa MW: 47099.8 Da PI: 5.3796 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.3e-31 | 217 | 275 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Carubv10009191m 217 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 275 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038153 | 2.2E-262 | 1 | 432 | No hit | No description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-31 | 210 | 277 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.879 | 211 | 277 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 214 | 277 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-38 | 216 | 276 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-26 | 218 | 275 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MCSVSELLDM DSFQGDLTDV VRGIGGHVLS PETPPQNIWP LPLPHPPPSP SDLHVNPFGD 60 PFVSMNDPLL QELNAVTNSN YFSTVGDNNN NNSNNGFLVP KVFEEDHIKS QCSIFPRIRI 120 SHSNNIIHDS SPCNSPAMSA HAVAAAAAAS PRGIINVDTN SPRNCLLVDG NTFSSQIQIS 180 SPRNLGLKRR KSQAKKVVCI PAPAAMNSRS SGEVVPSDLW AWRKYGQKPI KGSPFPRGYY 240 RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPIQR NALAGSTRSS SSSSSNPNSS 300 KSSNTNVNAT TSSIGSHNTT YLPSSTTHPP PVSVSSVKDE RGDEMELENV EDDDDNQIAP 360 YRPELHDLQH QPDDFFADLE ELEGDSLSML LSQGCAGDGK DKKMVSDGIS DFFCWSGDNN 420 NNNYDDQDSR SL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-25 | 191 | 277 | 2 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-25 | 191 | 277 | 2 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00171 | DAP | Transfer from AT1G30650 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009191m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228343 | 0.0 | AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23. | |||
GenBank | BT006468 | 0.0 | BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307568.1 | 0.0 | probable WRKY transcription factor 14 | ||||
Swissprot | Q9SA80 | 0.0 | WRK14_ARATH; Probable WRKY transcription factor 14 | ||||
TrEMBL | R0GXD5 | 0.0 | R0GXD5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006307568.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 0.0 | WRKY DNA-binding protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009191m |
Entrez Gene | 17897378 |
Publications ? help Back to Top | |||
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