PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009161m | ||||||||
Common Name | CARUB_v10009158mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 442aa MW: 49666.5 Da PI: 6.8849 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 331 | 364 | 15 | 53 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++++++ +L++++ + +K + a++L++A+ YI+ Carubv10009161m 331 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 364 7899999999999998.....8***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.994 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.32E-4 | 330 | 370 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.9E-7 | 331 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-9 | 331 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MLREECTPSS SWWEDVQHHH NDHANSINST SFYHKSSNNN SNANVSCEED NLSISNVNAS 60 NRLDLTAESS NNHHHSLSAP SSSTDELLRD HVVSSHNQLW SLAFLPGRSL GDQMMDHHHH 120 NHNHHLTPSR NSSTTSELPS FEPACDNGNG WIYDTNQVRY DQSSDQRLSK LTDLVGKHWS 180 IAPPNNPDMN HNLHHHFDHD HSQTNEDVSM YRQALEVKNE ETLCYNNGST GAGAGSLFHD 240 PIESSRGFLD IRLSRPLSDI NPSFKPCFKA LNLSEFNKKE HQTASLATVR LGTTNAGKKK 300 RCEEVSDEVS KKAKCGGGST LSPEKELPKA KLRDKITTLQ QIVSPFGKTD TASVLQEAIT 360 YINFYQEQVK LLSTPYMKNS SVKDPWGGWD REDHNKRGPR QHLDLRSRGL CLVPISCTPI 420 AYRDNSATDY WSPSYRGSLY R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009161m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493488 | 0.0 | AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307534.1 | 0.0 | transcription factor bHLH111 | ||||
Swissprot | Q9FYJ6 | 0.0 | BH111_ARATH; Transcription factor bHLH111 | ||||
TrEMBL | R0GWX4 | 0.0 | R0GWX4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006307533.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009161m |
Entrez Gene | 17899164 |