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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10008706m | ||||||||
Common Name | CARUB_v10008706mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 573aa MW: 64287.9 Da PI: 4.9163 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.7 | 4.8e-49 | 13 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i vd+ykv+P++Lp +++k+++++w+fF++r++ky++ r++r t +gyWkatgkd+ + Carubv10008706m 13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPSELPglSMLKTGDRQWFFFTPRNRKYPNAARSSRGTVTGYWKATGKDRVIE 105 69***************************.89***************644888999*************************************9 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktLvfy+grap+ge+tdWvmhey++ Carubv10008706m 106 Y-NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139 9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.833 | 12 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.06E-55 | 13 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-26 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MADSCFKAGK FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPSELPGL 60 SMLKTGDRQW FFFTPRNRKY PNAARSSRGT VTGYWKATGK DRVIEYNSRS VGLKKTLVFY 120 RGRAPNGERT DWVMHEYTMD EEELGRCKNA KEYFALYKLY KKSGAGPKNG EQYGAPFQEE 180 EWVDSDNEEA DNVAVPDNPV VHYENTRRMD DTKFCNPISV RLEDIEKLLN EIPDAPEVTT 240 RQFNEFSGVP QGNSVEEIQS TLLNGSSGEF IDPRKTGVFL PNAQPYNRNS SFQSRLKSAN 300 SFEATSGMTP LLDFEKEDYI EMDDLLIPEL GASSTEKSGQ FLNNGELGDI NEFDQLFHDI 360 SMSLDVDPVF QGTSTDMSSL SNFANNTSDQ KQQFLYPQLD QTLEYQQNNF MHPSTTLNQF 420 TDNMWFQDGQ AALYDQQPQS SSGVFTSHSA GVMPLESMNP TMSVNAQNTE GQNGGKTTSQ 480 FSSALWELLE SIPSTPASAC EGPLNQTFVR MSSFSRIRFN GTTSVTSRKV TVAKKRISNR 540 GFLLLSIMGA LCAIFWMFIA TVGVMERPVV LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-45 | 14 | 139 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00178 | DAP | Transfer from AT1G34180 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10008706m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493493 | 0.0 | AB493493.1 Arabidopsis thaliana At1g34180 mRNA for hypothetical protein, partial cds, clone: RAAt1g34180. | |||
GenBank | BT030344 | 0.0 | BT030344.1 Arabidopsis thaliana At1g34180 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307120.1 | 0.0 | NAC domain-containing protein 16 | ||||
Swissprot | A4FVP6 | 0.0 | NAC16_ARATH; NAC domain-containing protein 16 | ||||
TrEMBL | R0IRU7 | 0.0 | R0IRU7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006307120.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 0.0 | NAC domain containing protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10008706m |
Entrez Gene | 17900534 |
Publications ? help Back to Top | |||
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