PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008531m
Common NameCARUB_v10008529mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 658aa    MW: 74607.9 Da    PI: 6.5162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008531mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.13.4e-53131401128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp  + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd+++
  Carubv10008531m  13 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTI 105
                      699************************999.99***************6448899999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s k+  +g+kktLvfy+grap+ge+t+W+mheyr+
  Carubv10008531m 106 KS-KKVIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 140
                      **.9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-636163IPR003441NAC domain
PROSITE profilePS5100558.4513163IPR003441NAC domain
PfamPF023652.0E-2714139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MTTEQALLSM EALPLGFRFR PTDEELINHY LRLKINGRDS EVRVIPEIDV CKWEPWDLPG  60
LSVIKTDDQE WFFFCPRDRK YPSGHRSNRA TDIGYWKATG KDRTIKSKKV IIGMKKTLVF  120
YRGRAPRGER TNWIMHEYRA TDKELDGTGA GQNPYVLCRL FHKPSDSCDI ANCDGIENVN  180
TTPTTTRCSP DDTSSEMVQE TATSRVHALN RSDDTERCLS DKSNDVKPDV SVINNNTSIN  240
HAESSRAKDR GLGKTIVEEN PPARDNLTHY GSSFTQMNDR TYHPSHSSID FAASHIDSMY  300
SSDFGNFDYG LHFQDGAAEQ DASLTDVLDE VFHINNDSST ERKDFALPNM MHWPGNTRLL  360
STEYPFRKDA VSFVDGSAEV SGSQFVPENI APRWVSQHRV DSKEVTEIQS SSGSSRTVTP  420
LHSNVSGQYA SASYASIDPF NYNVNNPEQS SFEQSQTDRK ISPSDISEFK ARSRESQTNQ  480
DFVVDQGTAP RRIRLQIELP LTPVNHKKER DADNYEEDEV QSAMSKVVEV NERSFLNRDD  540
TLSESAKLKT QGTAQRRIRL QTRLRKPPVT LNNPRKHLNC SNEEASHREM QEKEDVSTSS  600
SSWQKEKKIV KKSLVQYSSM VIIMVVIVVL VGVWKESRDA KCSFLFHHLD SLKGMFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-46816715172NAC domain-containing protein 19
3swm_B2e-46816715172NAC domain-containing protein 19
3swm_C2e-46816715172NAC domain-containing protein 19
3swm_D2e-46816715172NAC domain-containing protein 19
3swp_A2e-46816715172NAC domain-containing protein 19
3swp_B2e-46816715172NAC domain-containing protein 19
3swp_C2e-46816715172NAC domain-containing protein 19
3swp_D2e-46816715172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10008531m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306958.10.0NAC domain-containing protein 14 isoform X2
SwissprotB5X5700.0NAC14_ARATH; NAC domain-containing protein 14
TrEMBLR0GVM40.0R0GVM4_9BRAS; Uncharacterized protein
STRINGXP_006306959.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.20.0NAC 014