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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Carubv10008427m |
Common Name | CARUB_v10008427mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MYB |
Protein Properties |
Length: 733aa MW: 82968.1 Da PI: 7.6481 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Carubv10008427m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 43.6 | 6.9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l
Carubv10008427m 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
78*****************************.************986 PP
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2 | Myb_DNA-binding | 34.6 | 4.3e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
WT eEde+l+++ k+l++ W+tIa +g Rt+ qc +r+ k+l
Carubv10008427m 60 TEWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
68*****************99.********8..**********9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent |
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0050832 | Biological Process | defense response to fungus |
GO:0009507 | Cellular Component | chloroplast |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 733 aa
Download sequence Send
to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDAADDPR 120 KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDGRHR KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT 240 TIEELEGKRR ADVEAQLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEAVR KRSKLMLPPP 300 QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG 360 KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP RKKEIQTPNP MLTPSMTPGG 420 AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ENAKLDRQRR EEAKRSLRSG 480 LTGLPQPKNE YQIVAQLPPE ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ 540 RDLPRPPAAS LEIIRNSLLS ADGDKSSVVP PTPIEIADKM VREELLQLLE HDNAKYPLDE 600 KAEKKKGAKN RTNSSASQFL AIEDFEENEL QEADSMIKEE GKFLRVSMKH ENTSLGDFVE 660 ARNTCVNDLI YLPTQNAYGL SSVAANAEKI AALQVDMENA RKKMEEDEKK AEHMKAKYKT 720 YTKGHEVIYT LL*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5mqf_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 726 | 3 | 725 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 185 | 204 | KRRELKAAGIDGRHRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help
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Source |
Description |
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC254583 | 0.0 | AC254583.1 Capsella rubella clone JGIBSIA-25G5, complete sequence. |