PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10008036m

Common Name

CARUB_v10008036mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 321aa MW: 36943.4 Da PI: 7.1532

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10008036m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	44.8	3.9e-14	15	126	11	128
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103 de +++++Lk+ v + + e++i++vd+++ +P+ + + ++ f + + ++++ gk +sg Wk g+dk ++s+ +g++ g k Carubv10008036m 15 DEVIISRFLKRMVINGDSMPEHFIQDVDVFNKNPNVE---F--DAERPGFVIVKPRTESCGKTDG--CESGCWKIIGRDKLIKSEkTGKVLGFK 101 88899****987777555488*******643...2..2333445555566555554443..579*********98678889* PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k+L f r p+ k +Wvm+eyrl Carubv10008036m 102 KILKFCLSRGPREYKRSWVMEEYRL 126 ***********************98 PP
2	NAM	31.5	5.1e-10	190	303	17	128
NAM 17 eyLkkkvegkkleleevikevdiykvePwdL..pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108 yL ++++ ++ + +++ ++y+++P +L p e+ + Fs++ r++ + +gyWk +d+++ sk+ge++g kk++ f Carubv10008036m 190 PYLITLAATEGNDWPSYVTNNNVYRLHPIELgdPFDQMFEDYGICIFSNET------CRTSDICYDGYWKIMHHDRPIRSKSGETIGFKKVFRF 277 578877777887787789999********43322223445556666543......377788899************************** PP NAM 109 y......kgrapkgektdWvmheyrl 128 + + +k +W+++eyrl Carubv10008036m 278 HtvgelrYVCEGVEVKVTWTIDEYRL 303 665543233444479*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.548	5	144	IPR003441	NAC domain
Pfam	PF02365	1.8E-8	14	126	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-25	15	142	IPR003441	NAC domain
SuperFamily	SSF101941	7.19E-22	160	318	IPR003441	NAC domain
PROSITE profile	PS51005	18.552	174	318	IPR003441	NAC domain
Pfam	PF02365	2.1E-4	235	303	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MANELDNVGL SNVEDEVIIS RFLKRMVING DSMPEHFIQD VDVFNKNPNV EFDAERPGFV 60 IVKPRTESCG KTDGCESGCW KIIGRDKLIK SEKTGKVLGF KKILKFCLSR GPREYKRSWV 120 MEEYRLTKNL NKKQDHLICK IQFLFRAEII SLLAKHFSYL STTISVPVPA NLLLPAYGYY 180 SPDTPEDDVP YLITLAATEG NDWPSYVTNN NVYRLHPIEL GDPFDQMFED YGICIFSNET 240 CRTSDICYDG YWKIMHHDRP IRSKSGETIG FKKVFRFHTV GELRYVCEGV EVKVTWTIDE 300 YRLNDAKHNK LLCVIKFTSS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10008036m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010473217.1	1e-158	PREDICTED: uncharacterized protein LOC104752711
TrEMBL	R0ETF2	0.0	R0ETF2_9BRAS; Uncharacterized protein
STRING	XP_006279133.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3704	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60350.1	1e-153	NAC domain containing protein 24

Link Out ? help Back to Top
Phytozome	Carubv10008036m
Entrez Gene	17874263