PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008035m
Common NameCARUB_v10008035mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 355aa    MW: 41509.6 Da    PI: 5.0534
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008035mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.21.5e-144615810128
              NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102
                      +de l+++yLk+ v + +   +++ik+vd+++ +P +       ++++  f + + +++  gk      +sg W+  g+dk ++s+ +g++ g 
  Carubv10008035m  46 EDEVLLSRYLKRMVVNGDSWHQQFIKDVDVFNKNPYEEF-----DSESPTFVIVKPRTEDCGKTDG--CESGCWRIIGRDKLIKSEkTGKVLGF 132
                      58999********99999777789***********8753.....2233455555556555554433..579*************98678889** PP

              NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                      kk+L f  +r+p+  k +Wvm+e+rl
  Carubv10008035m 133 KKILKFCVQRKPREYKRSWVMEEFRL 158
                      ************************98 PP
2NAM29.12.9e-0924133437128
              NAM  37 vdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkge......ktdWvm 123
                       ++y+++Pw+L   +  +++   f        ++g+     + ++gyW+    d+ v sk+ge +g kk++ +y+ ++++ +      k +W++
  Carubv10008035m 241 NNVYRLDPWKLV-DI--HDQ--MFLNFGTCFFTNGTCGVTdVCDNGYWRILHPDRLVRSKSGEPIGFKKVFQYYETKKQRYVcegedhKVTWTI 329
                      589********6.33..223..23333333333343333327889*****************************765554323333449***** PP

              NAM 124 heyrl 128
                      +eyrl
  Carubv10008035m 330 EEYRL 334
                      ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.91637176IPR003441NAC domain
SuperFamilySSF1019411.24E-2646174IPR003441NAC domain
PfamPF023651.8E-846158IPR003441NAC domain
SuperFamilySSF1019412.22E-22197349IPR003441NAC domain
PROSITE profilePS5100519.29205350IPR003441NAC domain
PfamPF023651.1E-4238334IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEDDLIEAE DEATYRLIME ELIRAEDDML IVEELIKAED ELIRAEDEVL LSRYLKRMVV  60
NGDSWHQQFI KDVDVFNKNP YEEFDSESPT FVIVKPRTED CGKTDGCESG CWRIIGRDKL  120
IKSEKTGKVL GFKKILKFCV QRKPREYKRS WVMEEFRLTN NLNKKQDHVI CKIRLLFEAE  180
TSSLLAKHFS YLPTTKAVPV PANLLLPAYG FKSTYPQMDD ESYVLMIPDS EGNSWPSYVT  240
NNVYRLDPWK LVDIHDQMFL NFGTCFFTNG TCGVTDVCDN GYWRILHPDR LVRSKSGEPI  300
GFKKVFQYYE TKKQRYVCEG EDHKVTWTIE EYRLVEMVMK NKVLCVIKLT IDDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10008035m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279132.20.0uncharacterized protein LOC17874264
TrEMBLR0GIC30.0R0GIC3_9BRAS; Uncharacterized protein
STRINGXP_006279132.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60350.11e-155NAC domain containing protein 24