PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007844m | ||||||||
Common Name | CARUB_v10007844mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 249aa MW: 28750 Da PI: 6.7976 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.4 | 1.2e-11 | 135 | 186 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++ +r+++NRe+A+rsR RK+ i++L++ v L+ eN++L ++l + Carubv10007844m 135 RKRKRMESNRESAKRSRMRKQSHIDNLRNQVNRLDLENRELGNRLRLVLHQL 186 67899************************************98877655555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.5E-11 | 124 | 188 | No hit | No description |
SMART | SM00338 | 2.9E-14 | 131 | 195 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.898 | 133 | 196 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.4E-9 | 135 | 180 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.59E-10 | 135 | 186 | No hit | No description |
CDD | cd14702 | 9.41E-18 | 136 | 187 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 138 | 153 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
IFFIMLSTVP AFSFSEPGLV NQFSGFQTGF TSWEWDCSDL FSVDHLSLEP EPAVPSPCYG 60 ESDAGSVRTN SGNHNMKTGS DEFCTGFDDA NQSDGLAKEP GSEDHKQLTA ITNFGSGEQN 120 HDRKKLTQPE MTDERKRKRM ESNRESAKRS RMRKQSHIDN LRNQVNRLDL ENRELGNRLR 180 LVLHQLQRVN TDNNRLVTEQ EILRLRLSEM RRVLIVRQLQ QQQQWELHNR RMIMTEQNHP 240 SSIIDQHL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 138 | RKKLTQPEMTDERKRKR |
2 | 147 | 152 | KRSRMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007844m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493725 | 1e-153 | AB493725.1 Arabidopsis thaliana At4g37730 gene for hypothetical protein, partial cds, clone: RAAt4g37730. | |||
GenBank | AL035709 | 1e-153 | AL035709.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project). | |||
GenBank | AL161592 | 1e-153 | AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88. | |||
GenBank | CP002687 | 1e-153 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286269.2 | 0.0 | bZIP transcription factor RISBZ4 | ||||
TrEMBL | R0FAV8 | 0.0 | R0FAV8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006286269.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37730.1 | 1e-114 | basic leucine-zipper 7 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007844m |
Entrez Gene | 17879520 |