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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Carubv10007591m |
Common Name | CARUB_v10007591mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
M-type_MADS |
Protein Properties |
Length: 367aa MW: 41574.5 Da PI: 8.1041 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Carubv10007591m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 66.9 | 2e-21 | 7 | 55 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
++++s +++++s+R+++i+KKAe LS+LCd+ev+vi + + g+l+++++
Carubv10007591m 7 SSSSSLASTSLSNRLETIFKKAEQLSILCDTEVCVIHYEPGGELQTWPK 55
899********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MPSLPPSSSS SLASTSLSNR LETIFKKAEQ LSILCDTEVC VIHYEPGGEL QTWPKEREKV 60 RDMALRYSQL NQALRRKKRV DLSEFLNEKK QKGLENLNKK RKTTSLEKKP VDILKYPISD 120 HYSPYQISKL IQSLELNVSK LQERLRSVEL QKKHRQSLAS SSSYLNHQTK SLNPSQFSLF 180 MYNHGDNTLS QIPVSASNLK QDFSALLQES QLKNQKVKQE LCGYDQNINI SDITNNNSFQ 240 HPCVSNKESV KNFGSMNQLM QKEFYGGDQN LYTSDITNSN VPDPSLSNTV SYEFCSDTCG 300 NNMVGNTSFS QDITDMSSTY DFNFDESSLL QKSNLPSAST IPDSYLLSNN MGNFNSNSFQ 360 QLSRFF*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |