PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007553m
Common NameCARUB_v10007553mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 348aa    MW: 39747.4 Da    PI: 9.7199
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007553mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.9e-161492187
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                     ffkvl     + s+ l +p kf++++ +g   e+kt+ le+  s +sW+v++  ++++    lt GWkeF+++++L+ gD+++F+++g 
  Carubv10007553m 14 FFKVL--LPGFDSN-LNIPMKFFSAYiEGR-YEGKTVELESdASEKSWKVEM--EGRR----LTFGWKEFASSHDLRIGDVIIFRHQGA 92
                     78888..6677777.99*********7444.57789***997889*******..8888....9**********************7653 PP
2B366.83.2e-21130216895
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      s+v+  ++l +pkkfa++  ++k +s  ++l++e  ++W++ l++r +s+++++++GW++F+++ngLk gD v+F+l++++ ++++++
  Carubv10007553m 130 SSVHGIHILFFPKKFATSGALIK-GSNNIVLMNEVAKKWRLILKFRESSRTFYMRDGWRSFCHENGLKPGDAVTFELESNNLKTPLLR 216
                      78888999********9998887.567**************************************************98877667665 PP
3B347.92.4e-152483351298
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      +s+   lpk+f++ + +++   +++tl d++g+ W v+l  +++  ++ l+ G k+F kang k+++++vF+l+++ +++ +++++++
  Carubv10007553m 248 SSSVTHLPKNFVKVNRMENLARRKITLLDKHGKDWAVTLVRERRNTQTRLGFGLKDFFKANGTKANESLVFELVWEdKTTLPLLRFCS 335
                      344457******999777778889***************888888889**************************99777777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-228105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-228109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.53411103IPR003340B3 DNA binding domain
CDDcd100171.17E-1612100No hitNo description
PfamPF023624.2E-111491IPR003340B3 DNA binding domain
SMARTSM010192.6E-2114103IPR003340B3 DNA binding domain
PROSITE profilePS5086314.593123220IPR003340B3 DNA binding domain
SMARTSM010198.6E-17126221IPR003340B3 DNA binding domain
PfamPF023629.1E-19130216IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-18130210IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-18130211No hitNo description
Gene3DG3DSA:2.40.330.109.5E-16131214IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955237336IPR003340B3 DNA binding domain
SMARTSM010191.9E-13242337IPR003340B3 DNA binding domain
PfamPF023621.5E-13249335IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-13249336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-12249331IPR015300DNA-binding pseudobarrel domain
CDDcd100177.07E-11254324No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MADPVLQSPE NPHFFKVLLP GFDSNLNIPM KFFSAYIEGR YEGKTVELES DASEKSWKVE  60
MEGRRLTFGW KEFASSHDLR IGDVIIFRHQ GALLFHVACF GPSCCEIQYR QSCNDDDHLY  120
DDQENLSKLS SVHGIHILFF PKKFATSGAL IKGSNNIVLM NEVAKKWRLI LKFRESSRTF  180
YMRDGWRSFC HENGLKPGDA VTFELESNNL KTPLLRFSTA EFTSVSTKDC NKLGKINKSG  240
DSQKVSSSSS VTHLPKNFVK VNRMENLARR KITLLDKHGK DWAVTLVRER RNTQTRLGFG  300
LKDFFKANGT KANESLVFEL VWEDKTTLPL LRFCSNAKTY SKLRPSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007553m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634987.11e-114LOW QUALITY PROTEIN: B3 domain-containing protein REM7
SwissprotQ8H2D06e-82REM7_ARATH; B3 domain-containing protein REM7
TrEMBLR0H2N70.0R0H2N7_9BRAS; Uncharacterized protein
STRINGXP_006286022.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.14e-84B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]