PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 353aa MW: 39776.4 Da PI: 6.2531

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10007456m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64	1.6e-20	9	58	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + +n+s ++ +s+R++ i+KKAe LS+LCd+ev+vi +++ g+l+++++ Carubv10007456m 9 SCSNSSSSSTRLSNRLANIFKKAEQLSILCDIEVCVIHYGPGGELQTWPK 58 679*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0049	8	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.241	12	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.0E-13	12	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-14	12	92	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MRSLPSSSSC SNSSSSSTRL SNRLANIFKK AEQLSILCDI EVCVIHYGPG GELQTWPKEK 60 SKVRDMALRY SQLNEALRRK KRVDLSEFLN EKKHKGLENL EKKRKTTGLE KKPVDVLKYP 120 ISDHYSPNQI SKLIQSLELN VSKLQERLRF VESQKLQSLA SSSLNHQTQS LNPSQFSLFM 180 YNHGDNTLSQ IPVSASNLNQ DFSALLQESQ LKNQLMKQEL CDYDQNINIS DMYNTNNSFQ 240 HPCVSNKETV QESLNNFGAM NQLMQKECYG GDQNLFTSDI TYSNVPDPSL SNTVSYEFCS 300 DTCGNNMVGN TSFSQDITDM SSNYDFNFDE SSLLQTSTLP SISTVSNNSM FL*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MRSLPSSSSC SNSSSSSTRL SNRLANIFKK AEQLSILCDI EVCVIHYGPG GELQTWPKEK  60
SKVRDMALRY SQLNEALRRK KRVDLSEFLN EKKHKGLENL EKKRKTTGLE KKPVDVLKYP  120
ISDHYSPNQI SKLIQSLELN VSKLQERLRF VESQKLQSLA SSSLNHQTQS LNPSQFSLFM  180
YNHGDNTLSQ IPVSASNLNQ DFSALLQESQ LKNQLMKQEL CDYDQNINIS DMYNTNNSFQ  240
HPCVSNKETV QESLNNFGAM NQLMQKECYG GDQNLFTSDI TYSNVPDPSL SNTVSYEFCS  300
DTCGNNMVGN TSFSQDITDM SSNYDFNFDE SSLLQTSTLP SISTVSNNSM FL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10007456m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010699	2e-69	AB010699.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9.
GenBank	AY141223	2e-69	AY141223.1 Arabidopsis thaliana MADS-box protein AGL43 mRNA, complete cds.
GenBank	CP002688	2e-69	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282935.2	0.0	agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-119	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	R0GXE7	0.0	R0GXE7_9BRAS; Uncharacterized protein
STRING	XP_006282935.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-110	AGAMOUS-like 75

Link Out ? help Back to Top
Phytozome	Carubv10007456m
Entrez Gene	17878932

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]