PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10007448m

Common Name

CARUB_v10007448mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

CPP

Protein Properties

Length: 676aa MW: 73652.2 Da PI: 5.9643

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10007448m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.6	3.9e-16	375	413	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Carubv10007448m 375 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 413 689**********************************96 PP
2	TCR	51.1	2.7e-16	460	498	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Carubv10007448m 460 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 498 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-19	374	415	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.543	375	500	IPR005172	CRC domain
Pfam	PF03638	6.5E-12	377	412	IPR005172	CRC domain
SMART	SM01114	3.7E-17	460	501	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-11	462	498	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MDTPQKSIPQ IGTPISKSRF EDSPVFNYIN SLSPIRPVKS IQNPHQFSSL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHISS SHPTDPVDSR EDESTSNEAV SSEAEGVNID ASKPEEASTE 120 MVLPQTSPGS PVASPCGREA TDLSLVPYAP SQGGNGSCED AGMELQKMYD NVQGKTETPD 180 WESLISDASE LLIFDSPDAS EAFRCFMMQR ASTSEARFST GVGMQTTQPD ANKKPESSDA 240 IPYEAVSLLH RGIRRRCLDF EMPGNKQNFG ENNTAACESS SRCVVPSIGL HLNAIAMSSK 300 DCKTNVTHDY SCSGNIQVGL QSSISSTLQE PLDQTEIESR EDADQDVPVE PALQELNLSS 360 PKKKRVKLDS GEGESCKRCN CKKSKCLKLY CECFAAGVYC IEPCSCIDCF NKPIHEDTVL 420 ATRKQIESRN PLAFAPKVIR NSESVLEAGD DASKTPASAR HKRGCNCKKS NCLKKYCECY 480 QGGVGCSINC RCEGCKNAFG RKDGSSSVDM EAEQDEENET SDKSRTAKSQ QNSEVLMRKE 540 SSSGLPTTPT YRQELVQLPF SSSKNRMPPP QSLLGGGSSN GIYNGQFLRR PDISLSQSRI 600 EKSFETVTED RPEEMPEILI HSPIPNIKSV SPNGKRVSPP HMESSSSGSI LGRRSGGRKL 660 ILQSIPSFPS LTPQH*

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MDTPQKSIPQ IGTPISKSRF EDSPVFNYIN SLSPIRPVKS IQNPHQFSSL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHISS SHPTDPVDSR EDESTSNEAV SSEAEGVNID ASKPEEASTE  120
MVLPQTSPGS PVASPCGREA TDLSLVPYAP SQGGNGSCED AGMELQKMYD NVQGKTETPD  180
WESLISDASE LLIFDSPDAS EAFRCFMMQR ASTSEARFST GVGMQTTQPD ANKKPESSDA  240
IPYEAVSLLH RGIRRRCLDF EMPGNKQNFG ENNTAACESS SRCVVPSIGL HLNAIAMSSK  300
DCKTNVTHDY SCSGNIQVGL QSSISSTLQE PLDQTEIESR EDADQDVPVE PALQELNLSS  360
PKKKRVKLDS GEGESCKRCN CKKSKCLKLY CECFAAGVYC IEPCSCIDCF NKPIHEDTVL  420
ATRKQIESRN PLAFAPKVIR NSESVLEAGD DASKTPASAR HKRGCNCKKS NCLKKYCECY  480
QGGVGCSINC RCEGCKNAFG RKDGSSSVDM EAEQDEENET SDKSRTAKSQ QNSEVLMRKE  540
SSSGLPTTPT YRQELVQLPF SSSKNRMPPP QSLLGGGSSN GIYNGQFLRR PDISLSQSRI  600
EKSFETVTED RPEEMPEILI HSPIPNIKSV SPNGKRVSPP HMESSSSGSI LGRRSGGRKL  660
ILQSIPSFPS LTPQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-17	379	497	14	120	Protein lin-54 homolog
5fd3_B	3e-17	379	497	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	367	PKKKRVKL
2	360	368	PKKKRVKLD

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10007448m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	1e-128	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	1e-128	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	1e-128	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282514.1	0.0	protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	R0F1B1	0.0	R0F1B1_9BRAS; Uncharacterized protein
STRING	XP_006282514.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Carubv10007448m
Entrez Gene	17879639

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]