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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007389m | ||||||||
Common Name | CARUB_v10007389mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 208aa MW: 23024.9 Da PI: 9.9918 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.7e-09 | 130 | 172 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Carubv10007389m 130 AAKNRRERISERLKVLQELVPNG-----TKVDLVTMLEKAIGYVKFLQ 172 569******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-11 | 121 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.888 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-13 | 122 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-10 | 124 | 175 | No hit | No description |
SMART | SM00353 | 2.1E-10 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 130 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
FSFDHHRSFV LPANSDSALS VLDRNMSYSY TGWTEQMDSI SPRVIKSSNC FATMRSFELT 60 SNPASKPATN HSDGDWLYSD STIVKTGSIL ESLSPKPAGN KRPSIGENTQ VSKKAKTKTT 120 NSPKDPQSQA AKNRRERISE RLKVLQELVP NGTKVDLVTM LEKAIGYVKF LQLQVNFWPT 180 QGRKAPDISQ VKEAIDAILS QQDMNSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007389m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488615 | 1e-53 | AF488615.1 Arabidopsis thaliana clone bHLH083 putative bHLH transcription factor mRNA, partial sequence. | |||
GenBank | AY128310 | 1e-53 | AY128310.1 Arabidopsis thaliana unknown protein (At1g66470) mRNA, complete cds. | |||
GenBank | BT006320 | 1e-53 | BT006320.1 Arabidopsis thaliana At1g66470 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023635590.1 | 1e-150 | LOW QUALITY PROTEIN: putative transcription factor bHLH086 | ||||
Swissprot | Q9FJ00 | 5e-99 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | R0F3A1 | 1e-152 | R0F3A1_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006282928.1 | 1e-153 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 1e-101 | RHD SIX-LIKE 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007389m |
Entrez Gene | 17878835 |
Publications ? help Back to Top | |||
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