PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007256m | ||||||||
Common Name | CARUB_v10007256mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | FAR1 | ||||||||
Protein Properties | Length: 794aa MW: 91036.1 Da PI: 6.5411 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 98.7 | 6.2e-31 | 85 | 177 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ +++eHnH+l+p Carubv10007256m 85 SFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMHDSGKWLVSGFVKEHNHDLVP 177 5****************************************999888555667889**********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-29 | 85 | 177 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.9E-32 | 298 | 390 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.2E-12 | 566 | 612 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.608 | 582 | 614 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.7E-8 | 589 | 616 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HALDDDDMLD SPIMPCGISL GNSGNYFPSQ 60 EEGCDLLDLE PYDGLEFESE EAAKSFYNSY ARRIGFSTRV SSSRRSRRDG AIIQRQFVCA 120 KEGFRNMNEK RTKDREIKRP RTITRVGCKA SLSVKMHDSG KWLVSGFVKE HNHDLVPPDQ 180 VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR 240 QKSIEGEIQL LLDYLRQMNA DNPNFFYAVQ GAEDQSVGNV FWADPKARLD FSFFGDTVTF 300 DTTYRSNRYR LPFAPFTGVN HHGQPILFGC AFIINETEAS FVWLFNTWLA AMSAHPPVSI 360 TTDHDAVIRA AIMQVFPSAR HRFCKWHIFK KCQEKLSHVF LNHPSFESDF HKCVNLTESV 420 DDFESCWFSL LDKYELREHE WLQAMYSDRR QWVPVYLRDT FFAEMSLTQR SDSINSYFDG 480 YINASTNLSQ FFKLYEKALE SRLEKEVKAD YDTMNSPPVL KTPSPMEKQA SELYTRKLFI 540 RFQEELVGTL TFMASKADDD GDLVTYQVAK YGEAHKAHFV KFNVLEMRAN CSCQMFEFSG 600 IICRHILAVF RVTNLLTLPP YYILKRWTRN AKSSVIFDDY NLHAYANYLE SHTVRYNTLR 660 HKASNFVQEA GKSLYTCDVA VVALQEAAKT VSLAMNKEVR RTMVNGHLKE SSVTDGKQMC 720 CSEDCQQEAL AQQQPEDEMD KKINQLRNEL ELSNRKCEAY RTNLLSVLKE MEDHKLQVSI 780 KVQNIKISLK DNL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007256m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL035538 | 0.0 | AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project). | |||
GenBank | AL161593 | 0.0 | AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89. | |||
GenBank | AY136457 | 0.0 | AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285782.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | R0H1Z6 | 0.0 | R0H1Z6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285782.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007256m |
Entrez Gene | 17880376 |
Publications ? help Back to Top | |||
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