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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006990m | ||||||||
Common Name | CARUB_v10006990mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 141aa MW: 15809.2 Da PI: 10.4917 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 6.8e-15 | 38 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+rWT+ Ed++l+++v+ G+ +Wk I +m g+t+k+c+ rw y Carubv10006990m 38 RKRWTPSEDLQLKELVAVSGPQNWKQIGDKML-GKTGKSCRMRWVGY 83 89*****************************9.***********766 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 90 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++++T eEd +l+ + k++G++ W++Ia+ + gRt+ +k++w+k++ Carubv10006990m 90 KKAFTDEEDAILLACQKKMGNK-WSKIAKILS-GRTDTAVKNHWHKLM 135 679*******************.*********.*************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.173 | 33 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.68E-27 | 36 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-13 | 37 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 38 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 40 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.25E-11 | 40 | 84 | No hit | No description |
PROSITE profile | PS51294 | 25.962 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-14 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-13 | 90 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.23E-10 | 92 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 92 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
TQVSQHILFD VALQGPASNG SGENDALMGV THEKKKERKR WTPSEDLQLK ELVAVSGPQN 60 WKQIGDKMLG KTGKSCRMRW VGYLDPNINK KAFTDEEDAI LLACQKKMGN KWSKIAKILS 120 GRTDTAVKNH WHKLMNRGKH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-28 | 41 | 137 | 7 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006990m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Levels follow a circadian cycle with a progressive decrease during the day time (at protein level) (PubMed:25343985). Down-regulated by brassinosteroids (BRs) in a dose- and time-dependent manner. Repressed by BES1. Auto-activation of expression (PubMed:24981610). Targeted to 26S proteasomal degradation by the CULLIN3 (CUL3)-based E3 ligases CRL3(BPMs) (PubMed:25343985). {ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285549.2 | 1e-100 | transcription factor MYB105 | ||||
Swissprot | Q6R053 | 3e-38 | MYB56_ARATH; Transcription factor MYB56 | ||||
TrEMBL | R0F931 | 1e-99 | R0F931_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006285549.1 | 1e-100 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39700.1 | 1e-49 | myb domain protein 89 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006990m |
Entrez Gene | 17878411 |
Publications ? help Back to Top | |||
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