PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006696m
Common NameCARUB_v10006696mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 490aa    MW: 55059.7 Da    PI: 5.8019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006696mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.39.7e-1224881896
                     --HHH.HTT---..--SEEEE.EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3 18 lpkkfaeehggkkeesktltl.edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     l  +f+ +h++       ++l  d s ++W+vkl  ++++    l++GW+eF  +++ ++gD++vFk++g++ f  +v+v
  Carubv10006696m 24 LHAEFLMNHMK-------VSLiSDASDKVWKVKL--DGGR----LADGWEEFTGEHKFRDGDVLVFKHQGDDVF--HVSV 88
                     55555555543.......444056999*******..9998....************************999998..7776 PP
2B3598.5e-19157247698
                      ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ ++l+++rl l++k++  + +++k    ++ +++e+gr W++kl  + +sg +++++GW++F+  n+Lk+gD + Fkl + +++++v+ ++ 
  Carubv10006696m 157 VTRYSLNKDRLDLSRKYTVLFgEHQK--ACEIDVMNEQGRIWTMKLAKNISSGVFYIRAGWEHFCFTNDLKQGDLCKFKLFQ-NGKKPVLWLCP 247
                      578999***********977755554..458***************99999999*************************988.66668887775 PP
3B371.11.4e-22280374699
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       +++  ++g+l+lp +f++e+g+kk++  +++l +++gr+W+ +l++    r++s++++l+kGW+e+++ang+k++D++ ++l++ +++++++k
  Carubv10006696m 280 YTPSRDSTGQLSLPVSFTREYGIKKAG--DVILLNQDGRKWSSYLQItglgRGGSEWFYLRKGWREMCEANGVKVNDSFKLELMW-NGETPMFK 370
                      5678889999************99888..7***************999999999*******************************.67779*** PP

                      EE-S CS
               B3  96 vfrk 99 
                      +++k
  Carubv10006696m 371 FCSK 374
                      *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.687192IPR003340B3 DNA binding domain
SMARTSM010192.3E-121092IPR003340B3 DNA binding domain
CDDcd100171.57E-72288No hitNo description
SuperFamilySSF1019361.84E-103088IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-113289IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.605152248IPR003340B3 DNA binding domain
SMARTSM010192.2E-19153249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-15156247IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-16157247IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-17157250IPR015300DNA-binding pseudobarrel domain
CDDcd100176.11E-17162247No hitNo description
Gene3DG3DSA:2.40.330.105.1E-20269374IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-16274373No hitNo description
SMARTSM010199.9E-27275375IPR003340B3 DNA binding domain
PROSITE profilePS5086312.844275374IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-20276377IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-23278374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MADPPRFSLF HQKFLTGDKP LLTLHAEFLM NHMKVSLISD ASDKVWKVKL DGGRLADGWE  60
EFTGEHKFRD GDVLVFKHQG DDVFHVSVAS GSVSGDIHHA SSSHVDTEDT CIADDYVDDD  120
DDDDDDDETN DDDDDDGESK DAADIDDDGD GNRARCVTRY SLNKDRLDLS RKYTVLFGEH  180
QKACEIDVMN EQGRIWTMKL AKNISSGVFY IRAGWEHFCF TNDLKQGDLC KFKLFQNGKK  240
PVLWLCPQEP GNDHKEKRTL DEVSKAKEKK APSPTVIVKY TPSRDSTGQL SLPVSFTREY  300
GIKKAGDVIL LNQDGRKWSS YLQITGLGRG GSEWFYLRKG WREMCEANGV KVNDSFKLEL  360
MWNGETPMFK FCSKIDNHEY KGKGNQKTCK KRACETAPQP RNVKKTPRVG VEGQVNKRIS  420
SGPLQPQSFS VSDQVASVKQ GIVDTLNTVR QCRTELETSE QNLQASLLAI DALGERIWGI  480
SKILSNNLI*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006696m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3363440.0AF336344.1 Arabidopsis thaliana reproductive meristem protein 1 (REM1) mRNA, complete cds.
GenBankBT0038910.0BT003891.1 Arabidopsis thaliana clone RAFL15-10-H22 (R20619) unknown protein (At4g31610) mRNA, complete cds.
GenBankBT0050020.0BT005002.1 Arabidopsis thaliana clone U20619 unknown protein (At4g31610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634986.10.0B3 domain-containing protein REM1 isoform X3
SwissprotQ84J390.0REM1_ARATH; B3 domain-containing protein REM1
TrEMBLR0F9690.0R0F969_9BRAS; Uncharacterized protein
STRINGXP_006285313.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]