 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Carubv10006604m |
| Common Name | CARUB_v10006604mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
GeBP |
| Protein Properties |
Length: 270aa MW: 30538.8 Da PI: 9.0704 |
| Description |
GeBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10006604m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF573 | 65.1 | 1.7e-20 | 76 | 165 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96
+lw +eDe++lLqG+i +k+ t ++ +++y+f+k+sisfkvs +q + Ki + K++kk + gk+p s ++d k+fel+k iW
Carubv10006604m 76 PQLWRKEDELILLQGIIRCKTGTSTKFNPsVREKIYNFIKGSISFKVSLKQCTAKIHAVRSKYQKKLDS---GKKP--SGPQDLKAFELAKEIW 164
579****************999998777746789*******************************9999...6665..568888********** PP
DUF573 97 g 97
g
Carubv10006604m 165 G 165
8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MVTKKISSEE EEEDSRETSS EEDEASSEDE EPTKEQTPSK AAEKAKGQKR VSERTSSQDM 60
SAAKKVKSSV KKSVPPQLWR KEDELILLQG IIRCKTGTST KFNPSVREKI YNFIKGSISF 120
KVSLKQCTAK IHAVRSKYQK KLDSGKKPSG PQDLKAFELA KEIWGLSGTS DAKESRKSEK 180
IQKLEEEKDV MIHEQGEDWF KNSILYRVVT ILGMEKDKVK SWSCVAKEKK KIMLDRWSDL 240
EAKDAEIVHQ KTAYVHDLIC VILEASPSH*
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G61730.1 | 7e-26 | DNA-binding storekeeper protein-related transcriptional regulator |
