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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006453m | ||||||||
Common Name | CARUB_v10006453mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26730.4 Da PI: 9.5745 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.2 | 1.6e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++++ rqvtfskRr+g++KKA+EL +LCdaev +iifsstgkly+++s Carubv10006453m 10 RIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 80.9 | 3e-27 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ + +q+e+a L++e++ Lq+++R+++Ge+L+ Ls++eL++Le+qLe sl +R kK+++l+++i+el kk + +++en +L++k++ Carubv10006453m 81 NPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQLEISLHGVRMKKEQMLTQEIQELSKKRNLIHQENLDLSRKVQ 171 567889***********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-32 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.32E-42 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 5.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.6E-25 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.367 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS 60 SMKSIIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL HALQENHRQM MGEQLNGLSV 120 NELNSLENQL EISLHGVRMK KEQMLTQEIQ ELSKKRNLIH QENLDLSRKV QRIHQENVEL 180 YKKAYAASTN GFIHRERAAV TVTDDESSQT QIRLQLSQPE HSDYETPPRA SE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006453m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336979 | 0.0 | AF336979.1 Arabidopsis thaliana MADS-box protein AGL21 mRNA, complete cds. | |||
GenBank | BT024846 | 0.0 | BT024846.1 Arabidopsis thaliana At4g37940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285120.1 | 1e-171 | agamous-like MADS-box protein AGL21 | ||||
Refseq | XP_023634972.1 | 1e-171 | agamous-like MADS-box protein AGL21 | ||||
Swissprot | Q9SZJ6 | 1e-155 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | R0H3E7 | 1e-170 | R0H3E7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285120.1 | 1e-170 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-158 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006453m |
Entrez Gene | 17880314 |
Publications ? help Back to Top | |||
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