PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006189m
Common NameCARUB_v10006189mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18593.8 Da    PI: 9.6179
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006189mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-151150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i ++s r vtf kR+ g+lKK +EL +LC++ ++ ii+s+
  Carubv10006189m 11 IADNSTRRVTFRKRKDGLLKKINELTILCGIPACAIIYSE 50
                     788999*********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.675150IPR002100Transcription factor, MADS-box
CDDcd002666.88E-23285No hitNo description
SuperFamilySSF554556.41E-22294IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGRRKVTHQL IADNSTRRVT FRKRKDGLLK KINELTILCG IPACAIIYSE YKDGPEVWPN  60
VSEVRSLLDR LSELPVEKQT KYMMDQKDLM NKMIHDAEKK LEKEKAYTRA MKLGIMASTS  120
DLTTDTDCSE ELAKAAEVID KKLKVIQERI KAVEAGAPII KRD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLIADNSTRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006189m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284897.21e-116agamous-like MADS-box protein AGL80
TrEMBLR0GZP31e-115R0GZP3_9BRAS; Uncharacterized protein
STRINGCagra.2356s0007.1.p1e-116(Capsella grandiflora)
STRINGXP_006284897.11e-116(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-96AGAMOUS-like 87