PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10005697m | ||||||||
Common Name | CARUB_v10005697mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25226.9 Da PI: 9.9161 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.3 | 2.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva++ifs++ klye+ss Carubv10005697m 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 79.4 | 8.8e-27 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +a++++ + e + L k+ie+L+ ++R+llGe+++++s++eLqqLe+qLe++l++iR+kK++ll+++ie+l++ e++l +enk+L++k+ Carubv10005697m 81 KGDANSQQAKDETRILTKKIEQLEISKRKLLGEGIDTCSIEELQQLENQLERGLTRIRAKKYQLLRQEIEKLKEEERKLAKENKELKEKW 170 678999*********************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.286 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.34E-39 | 3 | 70 | No hit | No description |
PRINTS | PR00404 | 4.4E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-32 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.5E-26 | 84 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.298 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS 60 SITKTIERYQ RRVKEIGINH KGDANSQQAK DETRILTKKI EQLEISKRKL LGEGIDTCSI 120 EELQQLENQL ERGLTRIRAK KYQLLRQEIE KLKEEERKLA KENKELKEKW LGMGATVASS 180 QSTLSSSEVN IDDDDNMEVE TGLFIGPPET RQSKKVPPQI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 5e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 5e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 5e-18 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10005697m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF312664 | 0.0 | AF312664.1 Arabidopsis thaliana MADS-box protein AGL19 (AGL19) mRNA, complete cds. | |||
GenBank | AY142523 | 0.0 | AY142523.1 Arabidopsis thaliana putative MADS box AGL protein (At4g22950) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023634924.1 | 1e-158 | agamous-like MADS-box protein AGL19 | ||||
Swissprot | O82743 | 1e-129 | AGL19_ARATH; Agamous-like MADS-box protein AGL19 | ||||
TrEMBL | R0F2Q8 | 1e-157 | R0F2Q8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282713.1 | 1e-158 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 1e-100 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10005697m |
Entrez Gene | 17880842 |
Publications ? help Back to Top | |||
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