PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 296aa MW: 33256.1 Da PI: 6.9662

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10005376m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.8e-16	36	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E+e++v+a k++G W++I +++g ++t+ q++s+ qk+ Carubv10005376m 36 REKWTEAEHEKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 80 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-16	30	84	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.705	31	85	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.5E-16	34	83	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-12	35	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-9	36	76	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-13	36	79	IPR001005	SANT/Myb domain
CDD	cd00167	1.90E-9	38	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0009845	Biological Process	seed germination
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAMQESLCDR ASDELISSTD AFYLKTRKPY TITKQREKWT EAEHEKFVEA LKLYGRAWRR 60 IEEHVGTKTA VQIRSHAQKF FTKVARDFGV SSETIEIPPP RPKRKPMHPY PRKLVIPDAK 120 EMVYGDLTGA KLVQDEDNRS PTSVLSAHGS DGLDSIGSNS PNSSSADYQH SPGHNELSSH 180 TEESLSPEAE TKQSLKLFGK TFVVGDYNSS TSSDDSEDVK KSETQSVLCS SSSSSENIET 240 EMTLRVSPEF KRSERSAFSQ LKSSVVTEIR GFMPYKKRVK VEENIDNVKM SYPLW*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:23371945}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10005376m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:19805390}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017069	1e-39	AB017069.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ8.
GenBank	AY519515	1e-39	AY519515.1 Arabidopsis thaliana MYB transcription factor (At5g37260) mRNA, complete cds.
GenBank	BT010947	1e-39	BT010947.1 Arabidopsis thaliana At5g37260 gene, complete cds.
GenBank	BT011641	1e-39	BT011641.1 Arabidopsis thaliana At5g37260 mRNA, complete cds.
GenBank	CP002688	1e-39	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284219.1	0.0	protein REVEILLE 2
Swissprot	F4K5X6	1e-167	RVE2_ARATH; Protein REVEILLE 2
TrEMBL	R0F5Q4	0.0	R0F5Q4_9BRAS; Uncharacterized protein
STRING	XP_006284219.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14432	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	1e-138	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Carubv10005376m
Entrez Gene	17878742

Publications ? help Back to Top
Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V A weed reaches new heights down under Plant Cell, 1999. 11(10): p. 1817-26 [PMID:10521514] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]