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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Carubv10005349m |
| Common Name | CARUB_v10005349mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
WRKY |
| Protein Properties |
Length: 303aa MW: 33898.8 Da PI: 7.8469 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10005349m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 94.9 | 5.7e-30 | 168 | 226 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58
++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh
Carubv10005349m 168 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSLLVATYEGTHNH 226
58***************************99**************************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0002237 | Biological Process | response to molecule of bacterial origin |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0010200 | Biological Process | response to chitin |
| GO:0042742 | Biological Process | defense response to bacterium |
| GO:0050691 | Biological Process | regulation of defense response to virus by host |
| GO:0050832 | Biological Process | defense response to fungus |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042802 | Molecular Function | identical protein binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MDCSSFLDLN TNPFPEMLPK KEASVSASTH FKRKWLEQDE SASELREELN RVNSENKKLN 60
EMLATVHENY CALRHQLEKL QSRQSPEISQ TEQPIKKRKQ DPDEFLGFPI GLSSGKTENS 120
SSNDDQQQQY EQKNQLISCK RPVTDSFNKA KVSTVYVPTD TSDTSLTVKD GYQWRKYGQK 180
VTRDNPSPRA YFRCSFAPSC PVKKKVQRSA EDPSLLVATY EGTHNHLGPN ASECDATSQG 240
GSSTVTLDLV HGSHRLALEK NERNTMQDVL VQQMASSLTK DSKFTAALAA AISGRLMEQS 300
RT*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF428421 | 0.0 | AF428421.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds. |
| GenBank | AK227401 | 0.0 | AK227401.1 Arabidopsis thaliana mRNA for WRKY like transcription factor, complete cds, clone: RAFL14-06-B12. |
| GenBank | AY125557 | 0.0 | AY125557.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds. |
| Publications
? help Back to Top |
- Keates SE,Kostman TA,Anderson JD,Bailey BA
Altered gene expression in three plant species in response to treatment with Nep1, a fungal protein that causes necrosis.
Plant Physiol., 2003. 132(3): p. 1610-22
[PMID:12857840] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Bülow L,Steffens NO,Galuschka C,Schindler M,Hehl R
AthaMap: from in silico data to real transcription factor binding sites.
In Silico Biol. (Gedrukt), 2006. 6(3): p. 243-52
[PMID:16922688] - Deeken R, et al.
Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
Plant J., 2008. 55(5): p. 746-59
[PMID:18485061] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhang Y, et al.
Regulation of oncogene expression in T-DNA-transformed host plant cells.
PLoS Pathog., 2015. 11(1): p. e1004620
[PMID:25615824] - Geilen K,Böhmer M
Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
Sci Rep, 2015. 5: p. 13369
[PMID:26293691] - Geilen K,Böhmer M
Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
Plant Signal Behav, 2015. 10(11): p. e1106659
[PMID:26479147] - Lu K, et al.
Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
J. Exp. Bot., 2016. 67(17): p. 5009-27
[PMID:27406784] - Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
Plant Cell, 2017. 29(1): p. 20-38
[PMID:28011690]
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