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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Carubv10005241m |
Common Name | CARUB_v10005241mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 325aa MW: 34294.3 Da PI: 6.7258 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Carubv10005241m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 225.8 | 8.1e-70 | 89 | 248 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsals 87
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + ++ +kr+r++ + + ++s
Carubv10005241m 89 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGDGAGsgsggvggGSSIPKRHRDT-TLPAGTSS 181
67899***************************************************99887655546789999999999999997.77788889 PP
DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
s++l+s ++ e+ +s+P evss+a+frcv++s+vddg+ ++aYqt+v+igGh+fkGiLydqG+e+
Carubv10005241m 182 SSRLPSDSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGDGQYAYQTTVNIGGHLFKGILYDQGPES 248
999**************************************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MAGIFSLGGN NNNNNGDQEE ENQQQQKTNW VWYRSNANAT NINPGSSQQI WQIPPEQMLM 60 HHHPHPQQQS LDLYPGHQID VSDLATSSRS ITISCRDCGN QAKKDCTHMR CRTCCKSRGF 120 DCSTHVRSTW IPVARRRERQ QQLHMSTSGG DGAGSGSGGV GGGSSIPKRH RDTTLPAGTS 180 SSSRLPSDSA GLEMGEASFP GEVSSDALFR CVKMSGVDDG DGQYAYQTTV NIGGHLFKGI 240 LYDQGPESSY MSAGSGGSDH QSSSAGGGGG GGNPFNPPIV ADGGGGGSSA MFVDPNSGGY 300 YSSNMTTSVF MPPGTQFYQN PPRS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL022141 | 0.0 | AL022141.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project). |
GenBank | AL161589 | 0.0 | AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85. |
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G36260.1 | 1e-152 | Lateral root primordium (LRP) protein-related |