PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10005139m | ||||||||
Common Name | CARUB_v10005139mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 40762.5 Da PI: 6.0668 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.8 | 5.2e-50 | 10 | 152 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrFhP+deelv++yL++k+++k+ e + e+d++ +ePw+Lp +k + kewyfFs rd+kyatg r+nrat Carubv10005139m 10 LPPGFRFHPSDEELVCHYLCNKIRAKSdqgdvedD---EvdetlkdatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRAT 100 79**********************99977665551...1555566653599*************87788999********************** PP NAM 79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 sgyWkatgkd++v++ +++lvg++ktLvfy++rap+g kt+W+mhe+rle Carubv10005139m 101 ISGYWKATGKDRTVMDPrTRQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152 ****************967778***************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-56 | 8 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.643 | 10 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-26 | 11 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDQGD VEDDEVDETL KDATDLVEID 60 LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTR 120 QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNIPPKE DWVLCRVFNK GRDSSLQDNN 180 YNNDHQTQRL EIIDAPDLNY APHYNNQLPP LLSSPPHHQQ QEKMKIQVCD QWEQLTKQPS 240 IRTTDHPYHQ HCHHQTVACG WEQMIIGSLS SSSSHGPDHE SLLNLLYVDN NNSVNITDDH 300 HQNYEKILLS PEMTSLEHDK TCMGSSSDGG MVSDLHVECG GLSFETDNLF PFH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-45 | 10 | 170 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10005139m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT002462 | 0.0 | BT002462.1 Arabidopsis thaliana NAM / CUC2 -like protein (At4g28530) mRNA, complete cds. | |||
GenBank | BT008741 | 0.0 | BT008741.1 Arabidopsis thaliana At4g28530 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284018.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 3e-58 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | R0F607 | 0.0 | R0F607_9BRAS; Uncharacterized protein | ||||
STRING | XP_006284018.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3436 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 0.0 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10005139m |
Entrez Gene | 17879927 |