PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005097m
Common NameCARUB_v10005097mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 367aa    MW: 40140.2 Da    PI: 8.2756
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005097mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.16.3e-34137237198
           DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkife 90 
                      k+fqrl+se Dei+lLqG++df++++g +p+dd daf+++vkk i+f+++ksq+v+K++rLKkKf++ vkk     ks++e++f k+ dqk+fe
  Carubv10005097m 137 KMFQRLFSEADEIALLQGVLDFTSTKG-DPYDDSDAFCSYVKKLIDFDATKSQIVTKLQRLKKKFTNTVKKslkkGKSEDEIQFPKDIDQKSFE 229
                      58*************************.****************************************99988888999*************** PP

           DUF573  91 lskkiWgs 98 
                      l++kiWgs
  Carubv10005097m 230 LARKIWGS 237
                      ******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-27139236IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAPKKAEVID NPPVASSSEE EESGSSGEES ESSAELSKKD ESSKKPESES EGESESESDS  60
EPDPEPAKTN KQPVVAKAKA EASGSAVAVP ESSTAKRPSK EAEPETNKKL KTSETEHVKV  120
PKTNDEAKKI SGEDAKKMFQ RLFSEADEIA LLQGVLDFTS TKGDPYDDSD AFCSYVKKLI  180
DFDATKSQIV TKLQRLKKKF TNTVKKSLKK GKSEDEIQFP KDIDQKSFEL ARKIWGSNGV  240
MTSKSRKKVG GTPASKAPKE MKLVVHSTPK KPAEAKRPEK TEAKAVNTGL SIGREIALFF  300
NAENSSSCCL DESTVTAVWK KVADGAEKTK VEEKWKKLKA KQMELCLQRT ELVNETAKMI  360
FKAYES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005097m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283973.10.0GLABROUS1 enhancer-binding protein-like isoform X1
SwissprotQ9SB421e-160STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLR0F5W30.0R0F5W3_9BRAS; Uncharacterized protein
STRINGXP_006283973.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-135DNA-binding storekeeper protein-related transcriptional regulator