PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TALE

Protein Properties

Length: 468aa MW: 53358.9 Da PI: 6.0867

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10004743m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.4	2.3e-08	385	423	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA + gLt +qV++WF N R + Carubv10004743m 385 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 423 5887779******************************88 PP
2	BELL	90.9	1.3e-29	260	330	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r++l+++k++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i Carubv10004743m 260 QRRALESQKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERICKKI 330 6899***************************************.**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.7E-59	190	328	IPR006563	POX domain
Pfam	PF07526	2.2E-28	196	326	IPR006563	POX domain
PROSITE profile	PS50071	10.981	364	427	IPR001356	Homeobox domain
CDD	cd00086	9.39E-10	367	428	No hit	No description
SMART	SM00389	7.1E-5	367	431	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-15	368	436	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-25	370	433	IPR009057	Homeodomain-like
Pfam	PF05920	1.5E-14	384	423	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008285	Biological Process	negative regulation of cell proliferation
GO:0009640	Biological Process	photomorphogenesis
GO:0010073	Biological Process	meristem maintenance
GO:0010227	Biological Process	floral organ abscission
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010371	Biological Process	regulation of gibberellin biosynthetic process
GO:0090470	Biological Process	shoot organ boundary specification
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MDNDNTFTSL DNVMANQNPL LMDFIPSRED STPFSTMLPW NSIRSDPLQM AGFDFFNSML 60 TNKYLSSSSR SFDDVQENRN VESFEVMAPP PPPPPLDHFR PYDDSSNNLW GFEGNSEFQT 120 YSGVVGPSEP MMSTFGEEDF PFLISNKRNN ELSLSLATDV SDECSEISLC GATNLASEQA 180 SCSSKDISTQ SFSQLIFGSK YLHSVQEILS HFASYSLDYS SRGTESAAAS SAFHSRFENL 240 TEFLDDDSNN SEAEFGSTLQ RRALESQKTH LLDLLQMVDD RYSHCVDEIH TVVSAFHAAT 300 ELDPQLHTRF ALQTISFLYK NLRERICKKI LAMGSVLERG KDKSQENSMF HQHCLLQQLK 360 RKNHQIWRPQ RGLPEKSVSV LRTWMFQNFL HPYPKDSEKH LLAIRSGLTR SQVSNWFINA 420 RVRLWKPMIE EMYAEMNKRK LNNSHLQPNG ATLRMPKSVM MSQAMHK*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MDNDNTFTSL DNVMANQNPL LMDFIPSRED STPFSTMLPW NSIRSDPLQM AGFDFFNSML  60
TNKYLSSSSR SFDDVQENRN VESFEVMAPP PPPPPLDHFR PYDDSSNNLW GFEGNSEFQT  120
YSGVVGPSEP MMSTFGEEDF PFLISNKRNN ELSLSLATDV SDECSEISLC GATNLASEQA  180
SCSSKDISTQ SFSQLIFGSK YLHSVQEILS HFASYSLDYS SRGTESAAAS SAFHSRFENL  240
TEFLDDDSNN SEAEFGSTLQ RRALESQKTH LLDLLQMVDD RYSHCVDEIH TVVSAFHAAT  300
ELDPQLHTRF ALQTISFLYK NLRERICKKI LAMGSVLERG KDKSQENSMF HQHCLLQQLK  360
RKNHQIWRPQ RGLPEKSVSV LRTWMFQNFL HPYPKDSEKH LLAIRSGLTR SQVSNWFINA  420
RVRLWKPMIE EMYAEMNKRK LNNSHLQPNG ATLRMPKSVM MSQAMHK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	8e-14	373	431	5	63	Homeobox protein Meis2
3k2a_B	8e-14	373	431	5	63	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:17908157}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10004743m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072174	0.0	AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBank	AY096513	0.0	AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBank	X80126	0.0	X80126.1 A.thaliana AtH1 mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006283680.1	0.0	homeobox protein ATH1
Refseq	XP_023634731.1	0.0	homeobox protein ATH1
Refseq	XP_023634732.1	0.0	homeobox protein ATH1
Swissprot	P48731	0.0	ATH1_ARATH; Homeobox protein ATH1
TrEMBL	R0GZK7	0.0	R0GZK7_9BRAS; Uncharacterized protein
STRING	XP_006283680.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8228	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	0.0	homeobox gene 1

Link Out ? help Back to Top
Phytozome	Carubv10004743m
Entrez Gene	17880886

Publications ? help Back to Top
Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]