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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Carubv10004710m |
| Common Name | CARUB_v10004710mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
B3 |
| Protein Properties |
Length: 481aa MW: 53754.1 Da PI: 9.7918 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10004710m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 33.2 | 9e-11 | 19 | 94 | 12 | 94 |
HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
+++ ++p f +++ +++ + +l+l++ s +W+vkl ++++ +++GW +F a+ L++ D+++F++dg++ f +v
Carubv10004710m 19 HNSNPIIPQVFSTAYlkDLNDLG--KLKLTSdASDTTWDVKL--NGRR----FAGGWDDFSAAHCLRDDDVLLFRHDGEMVF--HV 94
45557899999999986555433..6777765999*******..8887....99*********************9987777..44 PP
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| 2 | B3 | 45 | 2e-14 | 145 | 238 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
+ + +++++l+++r+ ++k+ +++g++k+ + l+++sg+sW + l++++ g+ ++++GW +F++an+Lk g f Fkl+ ++++++++
Carubv10004710m 145 CLIGVTPSNLRLNRVNFSKHLSRSNGLSKRW-CGIDLMNLSGESWALGLQHDNFNGQDYISGGWTSFCHANELKPGSFYRFKLVL-NRTRPLLR 236
55668999*****************988763.36*****************999999899**********************986.56667777 PP
EE CS
B3 96 vf 97
++
Carubv10004710m 237 LC 238
77 PP
|
| 3 | B3 | 73 | 3.8e-23 | 274 | 368 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f++v+ ++++l+sg+l+lp++fa+e+g+k++e +++l d++g +W ++ k++++++++ GW +F+ an+Lk+g+++++++++ +++++++
Carubv10004710m 274 FLTVTFKHYMLQSGQLRLPRSFARENGIKQAE--EIILVDKNGVKWPSYVASPKQREEFYMAHGWTSFCAANKLKTGETFTLEFVRGEGTTPML 365
7889999*******************999655..8***************99999999***************************99***9**9 PP
EEE CS
B3 95 kvf 97
k++
Carubv10004710m 366 KFC 368
987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 481 aa
Download sequence Send
to blast |
MAVPLSSSQP SFVISLAGHN SNPIIPQVFS TAYLKDLNDL GKLKLTSDAS DTTWDVKLNG 60
RRFAGGWDDF SAAHCLRDDD VLLFRHDGEM VFHVTPSGRC FSQLQCKSCS SGDDETGDDE 120
SVSKNISRKK ESRIKAESSS SEIFCLIGVT PSNLRLNRVN FSKHLSRSNG LSKRWCGIDL 180
MNLSGESWAL GLQHDNFNGQ DYISGGWTSF CHANELKPGS FYRFKLVLNR TRPLLRLCSY 240
IIPERNRSGA NGKANVSEKY SREGGSASTK QNKFLTVTFK HYMLQSGQLR LPRSFARENG 300
IKQAEEIILV DKNGVKWPSY VASPKQREEF YMAHGWTSFC AANKLKTGET FTLEFVRGEG 360
TTPMLKFCFM AKAKQEEAPE ETGAPYQKRA RVSVEVGHSR RTQAPNKSSD DPKILQRKQP 420
LQHCSFSGEA KNVKQSIVNI LTGIKRFRSE LEIKEQSLKA SLLEIDALGE KVLKINKILK 480
*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY063930 | 0.0 | AY063930.1 Arabidopsis thaliana unknown protein (At4g31620) mRNA, complete cds. |
| GenBank | AY133753 | 0.0 | AY133753.1 Arabidopsis thaliana clone U18158 unknown protein (At4g31620) mRNA, complete cds. |
