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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Carubv10004543m |
| Common Name | CARUB_v10004543mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
WRKY |
| Protein Properties |
Length: 541aa MW: 58804 Da PI: 5.2622 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10004543m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 97.2 | 1.1e-30 | 299 | 357 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+Dg++WrKYGqK+ kg+++pr+YYrCt+a Cpv+k+v+r+aed +++++tYeg+Hnh+
Carubv10004543m 299 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgACPVRKQVQRCAEDRSILITTYEGNHNHP 357
7****************************99***************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 541 aa
Download sequence Send
to blast |
MFRFPVSLGG SRDEGRHDQI TPLDEHRVVV DEVDFFSEKR ARVSRENIND AEDDEEADKV 60
HVKMENSRVE ENDRSRDVNI GLNLLTANTG SDESTVDDGL SMDMEDKRAK IENAQLQEEV 120
NKMKIENQRL RDMLSQATNN FNALQNQLVG VMRQQEQRNS SQDHLLATEG KAEGRNRQEL 180
QTMVPRQFMD LGPSSGAAEH EAEVSSEERT MIHSASPPSL LESSNLRENG KRLLGREESP 240
EESESNAWGN PNKVPKHNSS SSNNNNNGNG NVIDQSAAEA TMQKARVSVR ARSEAPMISD 300
GCQWRKYGQK MAKGNPCPRA YYRCTMAGAC PVRKQVQRCA EDRSILITTY EGNHNHPLPP 360
AAMAMASTTT AAASMLLSGS MSSQDGLMNP TNLLARAILP CSSSMATISA SAPFPTITLD 420
LTNSPNGNTP NMTTNNPLMQ FAQRPGFNPA VLPQVVGQAL YYNQQQSKFS GLQLPAQPLQ 480
IPATSSVSES VSAASAAIAS DPNFAAALAA AITSIMNGSS HQNNNTNNNN VATSNGDNRQ 540
*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY052648 | 0.0 | AY052648.1 Arabidopsis thaliana WRKY transcription factor 31 (WRKY31) mRNA, complete cds. |
